Wall clock time and date at job start Mon Mar 30 2020 02:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86297 * 109.47107 * 2 1 4 4 C 1.86296 * 109.47374 * 239.99554 * 2 1 3 5 5 O 1.63102 * 109.47077 * 119.99816 * 2 1 3 6 6 C 1.42905 * 113.99914 * 59.99734 * 5 2 1 7 7 C 1.50703 * 109.46849 * 90.00457 * 6 5 2 8 8 N 1.27948 * 119.99509 * 250.00307 * 7 6 5 9 9 Si 1.86799 * 120.00247 * 69.99829 * 7 6 5 10 10 H 1.48500 * 109.46923 * 89.99979 * 9 7 6 11 11 H 1.48499 * 109.47000 * 210.00298 * 9 7 6 12 12 H 1.48504 * 109.46974 * 330.00357 * 9 7 6 13 13 C 1.53003 * 109.47288 * 210.00162 * 6 5 2 14 14 C 1.53778 * 113.61196 * 60.00003 * 13 6 5 15 15 C 1.53787 * 87.08035 * 140.06532 * 14 13 6 16 16 C 1.53778 * 113.68969 * 157.53768 * 13 6 5 17 17 H 1.08999 * 109.47584 * 300.00267 * 1 2 3 18 18 H 1.09002 * 109.47008 * 60.00091 * 1 2 3 19 19 H 1.09000 * 109.47423 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47192 * 179.97438 * 3 2 1 21 21 H 1.08995 * 109.47368 * 299.99529 * 3 2 1 22 22 H 1.08999 * 109.47250 * 59.99986 * 3 2 1 23 23 H 1.08991 * 109.47254 * 300.00624 * 4 2 1 24 24 H 1.09002 * 109.46764 * 60.00205 * 4 2 1 25 25 H 1.09003 * 109.47420 * 180.02562 * 4 2 1 26 26 H 1.08996 * 109.47275 * 330.00149 * 6 5 2 27 27 H 0.97000 * 119.99368 * 180.02562 * 8 7 6 28 28 H 1.09004 * 112.84496 * 288.80701 * 13 6 5 29 29 H 1.08998 * 113.61879 * 25.52015 * 14 13 6 30 30 H 1.08997 * 113.69304 * 254.62101 * 14 13 6 31 31 H 1.09004 * 113.61202 * 89.11582 * 15 14 13 32 32 H 1.08994 * 113.61447 * 220.02014 * 15 14 13 33 33 H 1.08993 * 113.61229 * 105.46192 * 16 13 6 34 34 H 1.09000 * 113.61263 * 334.55842 * 16 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 8 2.4066 -0.7688 1.3318 6 6 1.9849 -2.1307 1.4295 7 6 2.9968 -3.0197 0.7536 8 7 2.7011 -3.6055 -0.3448 9 14 4.6829 -3.2661 1.5191 10 1 4.6431 -4.4308 2.4395 11 1 5.6811 -3.5151 0.4483 12 1 5.0646 -2.0481 2.2782 13 6 1.8654 -2.5231 2.9036 14 6 0.8528 -1.6717 3.6874 15 6 0.4284 -2.9695 4.3951 16 6 0.9318 -3.7198 3.1506 17 1 -0.3634 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 3.5740 1.7564 0.0005 21 1 2.1207 2.2702 -0.8900 22 1 2.1206 2.2703 0.8900 23 1 2.1207 -1.9059 -1.5210 24 1 2.1207 -0.3645 -2.4110 25 1 3.5741 -0.8787 -1.5208 26 1 1.0165 -2.2471 0.9430 27 1 3.3523 -4.1780 -0.7797 28 1 2.8331 -2.6150 3.3968 29 1 0.0707 -1.2388 3.0637 30 1 1.3155 -0.9429 4.3528 31 1 1.0032 -3.1835 5.2962 32 1 -0.6476 -3.0513 4.5487 33 1 1.4597 -4.6448 3.3824 34 1 0.1714 -3.8468 2.3800 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169975313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:04 Heat of formation + Delta-G solvation = -46.577422 kcal Electronic energy + Delta-G solvation = -13569.573924 eV Core-core repulsion = 11433.354634 eV Total energy + Delta-G solvation = -2136.219290 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.47627 -37.70920 -35.78826 -29.80523 -29.45388 -28.38047 -28.29132 -26.47271 -24.57895 -21.17037 -20.55677 -18.28350 -17.17001 -16.58291 -16.20470 -15.81254 -14.59244 -14.39646 -14.24387 -14.05309 -13.73197 -13.49183 -13.32089 -13.24546 -13.09125 -12.96255 -12.86434 -12.67128 -12.51124 -12.19306 -11.82096 -11.59983 -11.31764 -11.21600 -11.02535 -10.64957 -10.38251 -9.83715 0.62067 1.06915 1.41648 1.48548 1.75462 1.91929 1.94816 2.09929 2.55349 3.33773 3.70722 3.76160 3.86049 4.01678 4.24002 4.40602 4.74346 4.74996 4.76434 4.77355 4.78989 4.83813 4.84808 4.85442 4.89040 4.99722 5.04588 5.13644 5.23848 5.40483 5.50643 5.60091 5.62818 5.76191 6.74335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.508 4.508 2 Si 1.256 2.744 3 C -0.468 4.468 4 C -0.519 4.519 5 O -0.611 6.611 6 C 0.160 3.840 7 C -0.030 4.030 8 N -0.611 5.611 9 Si 0.922 3.078 10 H -0.237 1.237 11 H -0.250 1.250 12 H -0.221 1.221 13 C -0.114 4.114 14 C -0.124 4.124 15 C -0.145 4.145 16 C -0.136 4.136 17 H 0.071 0.929 18 H 0.072 0.928 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.340 0.660 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.093 -0.469 1.250 1.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.609 4.609 2 Si 1.392 2.608 3 C -0.574 4.574 4 C -0.621 4.621 5 O -0.568 6.568 6 C 0.103 3.897 7 C -0.279 4.279 8 N -0.227 5.227 9 Si 0.738 3.262 10 H -0.160 1.160 11 H -0.173 1.173 12 H -0.143 1.143 13 C -0.133 4.133 14 C -0.161 4.161 15 C -0.183 4.183 16 C -0.174 4.174 17 H 0.090 0.910 18 H 0.091 0.909 19 H 0.087 0.913 20 H 0.091 0.909 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.109 0.891 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.013 -0.589 1.253 1.385 hybrid contribution 0.357 -0.141 -0.644 0.750 sum 0.370 -0.730 0.609 1.020 Atomic orbital electron populations 1.26963 1.24963 1.04424 1.04597 0.77238 0.63683 0.64170 0.55694 1.26334 1.06815 1.19582 1.04701 1.27206 1.06222 1.10715 1.17948 1.85415 1.79336 1.25766 1.66275 1.20640 0.94726 0.79040 0.95337 1.30944 1.06456 0.94946 0.95579 1.68108 1.39579 1.06581 1.08426 0.85754 0.74975 0.83543 0.81936 1.16015 1.17293 1.14261 1.22717 0.99487 0.97755 0.93292 1.22783 0.98149 0.96526 0.98690 1.22858 1.01453 0.96641 0.97317 1.22975 0.98856 0.96895 0.98637 0.91020 0.90890 0.91300 0.90889 0.90629 0.90804 0.89053 0.91375 0.91805 0.90018 0.84236 0.88389 0.89812 0.90779 0.89962 0.91156 0.91088 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 0.15 8.56 101.05 0.87 1.02 16 2 Si 1.26 -0.79 12.68 -169.99 -2.16 -2.94 16 3 C -0.47 0.11 8.65 101.05 0.87 0.98 16 4 C -0.52 -0.33 7.98 101.05 0.81 0.47 16 5 O -0.61 -0.28 7.85 -35.23 -0.28 -0.56 16 6 C 0.16 0.02 1.62 -27.88 -0.05 -0.02 16 7 C -0.03 -0.01 4.12 -13.89 -0.06 -0.07 16 8 N -0.61 -0.31 11.40 56.23 0.64 0.34 16 9 Si 0.92 0.02 27.27 -169.99 -4.64 -4.62 16 10 H -0.24 0.01 7.11 56.52 0.40 0.41 16 11 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 12 H -0.22 -0.13 7.11 56.52 0.40 0.27 16 13 C -0.11 0.06 2.95 -89.81 -0.26 -0.21 16 14 C -0.12 0.10 7.44 -25.92 -0.19 -0.09 16 15 C -0.15 0.18 8.08 -25.91 -0.21 -0.03 16 16 C -0.14 0.15 7.63 -25.92 -0.20 -0.05 16 17 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 18 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 19 H 0.07 -0.01 7.10 -51.93 -0.37 -0.38 16 20 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 21 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 22 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 23 H 0.09 0.12 5.48 -51.93 -0.28 -0.16 16 24 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 25 H 0.06 0.05 7.96 -51.93 -0.41 -0.36 16 26 H 0.08 -0.04 5.93 -51.93 -0.31 -0.35 16 27 H 0.34 -0.32 8.23 -40.82 -0.34 -0.65 16 28 H 0.10 -0.09 6.24 -51.93 -0.32 -0.41 16 29 H 0.08 -0.09 8.10 -51.93 -0.42 -0.51 16 30 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 31 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 32 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 33 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.09 -0.11 7.97 -51.93 -0.41 -0.52 16 LS Contribution 274.91 15.07 4.14 4.14 Total: 0.00 -2.17 274.91 -6.54 -8.72 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: -5.84 Total: -7.08 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 1.58 Total: 2.01 kcal Atomic # 7 Polarization: -0.31 SS G_CDS: 0.64 Total: 0.34 kcal Atomic # 8 Polarization: -0.28 SS G_CDS: -0.28 Total: -0.56 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -6.79 Total: -7.56 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -2.17 -6.54 -8.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169975313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.862 kcal (2) G-P(sol) polarization free energy of solvation -2.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds