Wall clock time and date at job start Mon Mar 30 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.62886 * 2 1 4 4 O 1.43750 * 109.63513 * 239.75727 * 2 1 3 5 5 C 1.44787 * 104.81649 * 264.43181 * 4 2 1 6 6 C 1.54905 * 101.72092 * 323.89758 * 5 4 2 7 7 H 1.09004 * 110.84239 * 277.08918 * 6 5 4 8 8 C 1.53001 * 110.69665 * 153.95614 * 6 5 4 9 9 C 1.53000 * 109.47355 * 179.88512 * 8 6 5 10 10 C 1.53001 * 109.47355 * 179.97438 * 9 8 6 11 11 C 1.50694 * 109.47168 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 O 1.43370 * 109.63307 * 120.39157 * 2 1 3 20 20 H 1.08998 * 109.47212 * 299.60587 * 1 2 3 21 21 H 1.08998 * 109.47096 * 59.60873 * 1 2 3 22 22 H 1.09003 * 109.47176 * 179.61125 * 1 2 3 23 23 H 1.08994 * 109.47555 * 180.39144 * 3 2 1 24 24 H 1.09002 * 109.47122 * 300.39741 * 3 2 1 25 25 H 1.09006 * 109.46781 * 60.39130 * 3 2 1 26 26 H 1.08991 * 110.97954 * 205.78325 * 5 4 2 27 27 H 1.09008 * 110.97442 * 82.00135 * 5 4 2 28 28 H 1.09002 * 109.46926 * 59.88876 * 8 6 5 29 29 H 1.08992 * 109.47494 * 299.88870 * 8 6 5 30 30 H 1.09002 * 109.46807 * 60.00291 * 9 8 6 31 31 H 1.08998 * 109.47285 * 299.99893 * 9 8 6 32 32 H 1.09007 * 109.46922 * 59.99890 * 10 9 8 33 33 H 1.09003 * 109.46836 * 300.00646 * 10 9 8 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0130 -0.6819 -1.1696 5 6 2.2653 -2.0381 -0.7298 6 6 2.7885 -1.8097 0.7102 7 1 3.8511 -1.5670 0.7029 8 6 2.5223 -3.0376 1.5834 9 6 3.0517 -2.7833 2.9961 10 6 2.7849 -4.0109 3.8694 11 6 3.3058 -3.7602 5.2611 12 1 3.7794 -2.8192 5.4991 13 6 3.1778 -4.7322 6.2307 14 7 2.6007 -5.8779 5.9410 15 14 3.8241 -4.4216 7.9555 16 1 3.5651 -5.6131 8.8032 17 1 5.2852 -4.1630 7.8975 18 1 3.1353 -3.2417 8.5373 19 8 2.0116 -0.6832 1.1648 20 1 -0.3633 0.5077 0.8935 21 1 -0.3633 0.5199 -0.8864 22 1 -0.3634 -1.0277 -0.0070 23 1 3.1338 1.4382 -0.0070 24 1 1.6762 1.9580 -0.8864 25 1 1.6877 1.9538 0.8935 26 1 3.0245 -2.5145 -1.3499 27 1 1.3458 -2.6234 -0.7227 28 1 3.0280 -3.9036 1.1563 29 1 1.4499 -3.2276 1.6260 30 1 2.5459 -1.9173 3.4232 31 1 4.1241 -2.5934 2.9536 32 1 3.2903 -4.8773 3.4425 33 1 1.7123 -4.2004 3.9119 34 1 2.5110 -6.5618 6.6230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211454619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:14 Heat of formation + Delta-G solvation = -118.245126 kcal Electronic energy + Delta-G solvation = -14577.052597 eV Core-core repulsion = 12088.174853 eV Total energy + Delta-G solvation = -2488.877743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.51432 -35.45327 -34.41218 -33.07523 -31.67727 -29.13015 -27.49407 -26.35203 -23.60078 -21.33589 -21.14438 -19.97151 -17.38976 -16.38126 -16.12394 -15.22089 -14.51636 -14.42571 -14.22494 -13.59042 -13.21304 -12.78559 -12.63178 -12.26449 -12.16509 -12.13220 -11.91278 -11.74820 -11.19955 -11.11120 -10.73209 -10.58366 -10.44567 -10.02942 -9.60934 -9.56256 -9.19956 -8.98018 -8.30215 -5.95797 -3.97601 3.36368 3.40141 3.43285 3.45888 4.01118 4.48821 4.64051 4.80783 4.87196 5.03471 5.19983 5.37381 5.39822 5.49955 5.56846 5.59289 5.65361 5.71454 5.90391 6.03399 6.08309 6.14774 6.19543 6.46091 6.80554 6.95874 7.21308 7.25247 7.72758 7.88482 8.05089 8.48778 9.09476 9.66078 11.15642 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054581 B = 0.005522 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.871287 B = 5069.219660 C = 5273.050823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.246 3.754 3 C -0.153 4.153 4 O -0.380 6.380 5 C 0.019 3.981 6 C 0.054 3.946 7 H 0.082 0.918 8 C -0.117 4.117 9 C -0.107 4.107 10 C 0.021 3.979 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.892 3.108 16 H -0.287 1.287 17 H -0.277 1.277 18 H -0.277 1.277 19 O -0.367 6.367 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.014 0.986 33 H 0.015 0.985 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.066 9.886 -13.398 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.169 3.831 3 C -0.210 4.210 4 O -0.301 6.301 5 C -0.058 4.058 6 C -0.003 4.003 7 H 0.100 0.900 8 C -0.154 4.154 9 C -0.144 4.144 10 C -0.016 4.016 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.213 1.213 17 H -0.203 1.203 18 H -0.203 1.203 19 O -0.288 6.288 20 H 0.093 0.907 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.124 0.876 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.033 0.967 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.135 9.874 -13.316 16.715 hybrid contribution 0.311 -0.090 0.968 1.021 sum -1.824 9.784 -12.348 15.860 Atomic orbital electron populations 1.22357 0.94176 1.03301 1.02921 1.23351 0.92857 0.91454 0.75397 1.22055 1.02387 0.93711 1.02849 1.89192 1.86102 1.22262 1.32505 1.24470 1.01454 0.84540 0.95294 1.23924 0.96008 0.87681 0.92704 0.89968 1.21816 1.02230 0.94106 0.97261 1.21571 0.99214 1.01136 0.92501 1.19106 0.96909 0.91978 0.93653 1.21252 1.38083 1.00858 0.95561 0.92777 1.25028 0.95423 0.95195 0.98854 1.69959 1.43957 1.05800 1.33998 0.86662 0.79413 0.77542 0.84411 1.21309 1.20267 1.20256 1.88980 1.69545 1.41812 1.28501 0.90704 0.91089 0.91806 0.91564 0.91121 0.90512 0.87623 0.90645 0.90818 0.91527 0.92712 0.93558 0.96762 0.96693 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.20 37.15 0.34 -1.65 16 2 C 0.25 3.34 1.47 -26.74 -0.04 3.30 16 3 C -0.15 -1.74 9.24 37.16 0.34 -1.39 16 4 O -0.38 -5.25 11.00 -59.04 -0.65 -5.90 16 5 C 0.02 0.24 7.36 38.16 0.28 0.52 16 6 C 0.05 0.81 3.68 -25.73 -0.09 0.71 16 7 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 8 C -0.12 -1.98 4.99 -26.73 -0.13 -2.12 16 9 C -0.11 -2.28 5.07 -26.73 -0.14 -2.41 16 10 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 11 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 15 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 O -0.37 -5.99 10.24 -59.04 -0.60 -6.59 16 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 0.89 8.04 -51.92 -0.42 0.47 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 1.22 7.92 -51.93 -0.41 0.81 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 33 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 283.80 15.07 4.28 4.28 Total: -1.00 -31.57 283.80 -7.11 -38.68 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -5.87 Total: -4.26 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 0.01 Total: -16.56 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.74 Total: -26.70 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -1.25 Total: -12.50 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.57 -7.11 -38.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211454619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.562 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds