Wall clock time and date at job start Mon Mar 30 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.62886 * 2 1 4 4 O 1.43750 * 109.63513 * 239.75727 * 2 1 3 5 5 C 1.44787 * 104.81649 * 264.43181 * 4 2 1 6 6 C 1.54905 * 101.72092 * 323.89758 * 5 4 2 7 7 H 1.09004 * 110.84239 * 277.08918 * 6 5 4 8 8 C 1.53001 * 110.69665 * 153.95614 * 6 5 4 9 9 C 1.53000 * 109.47355 * 179.88512 * 8 6 5 10 10 C 1.53001 * 109.47355 * 179.97438 * 9 8 6 11 11 C 1.50694 * 109.47168 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 O 1.43370 * 109.63307 * 120.39157 * 2 1 3 20 20 H 1.08998 * 109.47212 * 299.60587 * 1 2 3 21 21 H 1.08998 * 109.47096 * 59.60873 * 1 2 3 22 22 H 1.09003 * 109.47176 * 179.61125 * 1 2 3 23 23 H 1.08994 * 109.47555 * 180.39144 * 3 2 1 24 24 H 1.09002 * 109.47122 * 300.39741 * 3 2 1 25 25 H 1.09006 * 109.46781 * 60.39130 * 3 2 1 26 26 H 1.08991 * 110.97954 * 205.78325 * 5 4 2 27 27 H 1.09008 * 110.97442 * 82.00135 * 5 4 2 28 28 H 1.09002 * 109.46926 * 59.88876 * 8 6 5 29 29 H 1.08992 * 109.47494 * 299.88870 * 8 6 5 30 30 H 1.09002 * 109.46807 * 60.00291 * 9 8 6 31 31 H 1.08998 * 109.47285 * 299.99893 * 9 8 6 32 32 H 1.09007 * 109.46922 * 59.99890 * 10 9 8 33 33 H 1.09003 * 109.46836 * 300.00646 * 10 9 8 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0130 -0.6819 -1.1696 5 6 2.2653 -2.0381 -0.7298 6 6 2.7885 -1.8097 0.7102 7 1 3.8511 -1.5670 0.7029 8 6 2.5223 -3.0376 1.5834 9 6 3.0517 -2.7833 2.9961 10 6 2.7849 -4.0109 3.8694 11 6 3.3058 -3.7602 5.2611 12 1 3.7794 -2.8192 5.4991 13 6 3.1778 -4.7322 6.2307 14 7 2.6007 -5.8779 5.9410 15 14 3.8241 -4.4216 7.9555 16 1 3.5651 -5.6131 8.8032 17 1 5.2852 -4.1630 7.8975 18 1 3.1353 -3.2417 8.5373 19 8 2.0116 -0.6832 1.1648 20 1 -0.3633 0.5077 0.8935 21 1 -0.3633 0.5199 -0.8864 22 1 -0.3634 -1.0277 -0.0070 23 1 3.1338 1.4382 -0.0070 24 1 1.6762 1.9580 -0.8864 25 1 1.6877 1.9538 0.8935 26 1 3.0245 -2.5145 -1.3499 27 1 1.3458 -2.6234 -0.7227 28 1 3.0280 -3.9036 1.1563 29 1 1.4499 -3.2276 1.6260 30 1 2.5459 -1.9173 3.4232 31 1 4.1241 -2.5934 2.9536 32 1 3.2903 -4.8773 3.4425 33 1 1.7123 -4.2004 3.9119 34 1 2.5110 -6.5618 6.6230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211454619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:14 Heat of formation + Delta-G solvation = -137.749814 kcal Electronic energy + Delta-G solvation = -14577.898383 eV Core-core repulsion = 12088.174853 eV Total energy + Delta-G solvation = -2489.723530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.58756 -36.90006 -35.78980 -34.73050 -33.23547 -30.64320 -28.43112 -27.92600 -25.32450 -22.76171 -22.23432 -21.66101 -18.50095 -18.46314 -17.29441 -16.57093 -16.21580 -15.87422 -15.47325 -14.81655 -14.47482 -14.26958 -13.99719 -13.71714 -13.41445 -13.14162 -13.09522 -12.97963 -12.72390 -12.65086 -12.50223 -12.39882 -12.13600 -11.46245 -11.33622 -11.09698 -10.98177 -10.57311 -10.54814 -8.20288 -6.31431 1.39179 1.42559 1.50594 2.40965 2.42696 3.00066 3.12382 3.51510 3.81549 3.88258 3.99278 4.07901 4.32655 4.35614 4.51754 4.64828 4.68608 4.75526 4.77822 4.79200 4.86822 4.99824 5.13501 5.18167 5.23341 5.25327 5.26599 5.53198 5.77045 5.86573 6.19041 6.26554 6.85006 7.37603 8.91303 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054581 B = 0.005522 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.871287 B = 5069.219660 C = 5273.050823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.234 3.766 3 C -0.151 4.151 4 O -0.386 6.386 5 C 0.023 3.977 6 C 0.053 3.947 7 H 0.088 0.912 8 C -0.108 4.108 9 C -0.093 4.093 10 C 0.024 3.976 11 C -0.548 4.548 12 H 0.056 0.944 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.280 1.280 17 H -0.266 1.266 18 H -0.269 1.269 19 O -0.394 6.394 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.050 0.950 32 H -0.004 1.004 33 H -0.011 1.011 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 10.787 -13.797 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.158 3.842 3 C -0.208 4.208 4 O -0.307 6.307 5 C -0.053 4.053 6 C -0.004 4.004 7 H 0.105 0.895 8 C -0.145 4.145 9 C -0.131 4.131 10 C -0.013 4.013 11 C -0.585 4.585 12 H 0.074 0.926 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.789 3.211 16 H -0.205 1.205 17 H -0.191 1.191 18 H -0.194 1.194 19 O -0.316 6.316 20 H 0.095 0.905 21 H 0.109 0.891 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.151 0.849 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.015 0.985 33 H 0.007 0.993 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.714 10.788 -13.731 17.546 hybrid contribution 0.155 -0.383 1.079 1.155 sum -1.559 10.405 -12.653 16.456 Atomic orbital electron populations 1.22367 0.93070 1.03178 1.03990 1.23696 0.93820 0.92102 0.74598 1.22072 1.02081 0.92629 1.04029 1.89183 1.86202 1.22767 1.32582 1.24538 1.02486 0.84345 0.93909 1.23871 0.96360 0.86443 0.93681 0.89456 1.21673 1.01708 0.96078 0.95062 1.21348 0.99501 0.98001 0.94259 1.19025 0.94759 0.93582 0.93972 1.21700 1.38567 1.01180 0.97102 0.92599 1.25982 0.95432 0.94791 1.03556 1.70085 1.44851 1.06738 1.35633 0.85509 0.79181 0.77765 0.78649 1.20544 1.19078 1.19385 1.88957 1.69911 1.42398 1.30358 0.90524 0.89120 0.92556 0.92080 0.89211 0.90056 0.84949 0.90030 0.89310 0.92134 0.93996 0.93140 0.98526 0.99288 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 9.20 71.98 0.66 -3.04 16 2 C 0.23 5.99 1.47 30.59 0.04 6.04 16 3 C -0.15 -3.17 9.24 71.98 0.66 -2.51 16 4 O -0.39 -9.87 11.00 -126.22 -1.39 -11.26 16 5 C 0.02 0.53 7.36 72.63 0.53 1.07 16 6 C 0.05 1.53 3.68 31.25 0.11 1.65 16 7 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 8 C -0.11 -3.61 4.99 30.59 0.15 -3.46 16 9 C -0.09 -4.03 5.07 30.59 0.16 -3.87 16 10 C 0.02 1.29 4.97 29.85 0.15 1.44 16 11 C -0.55 -32.33 9.11 25.60 0.23 -32.09 16 12 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 15 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 O -0.39 -12.56 10.24 -126.22 -1.29 -13.85 16 20 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.08 1.77 8.04 -2.38 -0.02 1.75 16 28 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.04 1.89 7.92 -2.39 -0.02 1.87 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 33 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -67.40 283.80 3.84 -63.56 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.04 Total: 6.11 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.17 Total: -34.32 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.28 Total: -57.42 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -2.68 Total: -25.10 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -67.40 3.84 -63.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211454619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.192 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds