Wall clock time and date at job start Mon Mar 30 2020 02:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38336 * 119.94579 * 2 1 4 4 C 1.38352 * 120.37254 * 180.02562 * 3 2 1 5 5 C 1.37955 * 119.99398 * 0.02562 * 4 3 2 6 6 C 1.39373 * 119.77916 * 359.89644 * 5 4 3 7 7 C 1.38125 * 119.94351 * 179.97438 * 2 1 3 8 8 C 1.48535 * 119.08939 * 180.26170 * 6 5 4 9 9 C 1.40936 * 120.51903 * 198.73055 * 8 6 5 10 10 H 1.08004 * 119.99813 * 330.48235 * 9 8 6 11 11 C 1.40022 * 120.00526 * 150.48201 * 9 8 6 12 12 N 1.30793 * 120.00475 * 161.36219 * 11 9 8 13 13 Si 1.86806 * 119.99837 * 341.36733 * 11 9 8 14 14 H 1.48503 * 109.47248 * 95.33013 * 13 11 9 15 15 H 1.48500 * 109.46997 * 215.32919 * 13 11 9 16 16 H 1.48498 * 109.46998 * 335.32764 * 13 11 9 17 17 C 1.36297 * 118.96652 * 18.75128 * 8 6 5 18 18 C 1.50411 * 120.46561 * 0.63193 * 17 8 6 19 19 C 1.50518 * 120.56745 * 179.76346 * 5 4 3 20 20 H 1.08997 * 109.47346 * 90.00159 * 1 2 3 21 21 H 1.09001 * 109.47050 * 210.00338 * 1 2 3 22 22 H 1.09000 * 109.47164 * 330.00027 * 1 2 3 23 23 H 1.08006 * 119.81335 * 0.30156 * 3 2 1 24 24 H 1.08004 * 119.99963 * 179.97438 * 4 3 2 25 25 H 1.08001 * 120.16733 * 0.02562 * 7 2 1 26 26 H 0.96997 * 120.00285 * 179.97438 * 12 11 9 27 27 H 1.08007 * 119.76730 * 180.61300 * 17 8 6 28 28 H 1.08996 * 109.22866 * 84.30167 * 18 17 8 29 29 H 1.08996 * 109.23681 * 203.72418 * 18 17 8 30 30 H 1.09002 * 109.35818 * 264.99221 * 19 5 4 31 31 H 1.09001 * 109.35319 * 24.56399 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1987 0.0000 4 6 3.5810 1.2090 -0.0005 5 6 4.2795 0.0194 -0.0016 6 6 3.5869 -1.1901 0.0000 7 6 2.1964 -1.1969 0.0005 8 6 4.3544 -2.4618 0.0048 9 6 3.7405 -3.6696 -0.3833 10 1 2.6806 -3.8100 -0.2307 11 6 4.5047 -4.6876 -0.9666 12 7 4.0492 -5.9134 -0.9943 13 14 6.1751 -4.2951 -1.7052 14 1 7.2361 -4.5683 -0.7029 15 1 6.3973 -5.1421 -2.9046 16 1 6.2195 -2.8630 -2.0955 17 6 5.6614 -2.4425 0.3907 18 6 6.3113 -1.1553 0.8186 19 6 5.7847 0.0155 -0.0075 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6536 2.1318 0.0049 24 1 4.1141 2.1483 -0.0009 25 1 1.6582 -2.1332 0.0005 26 1 4.5784 -6.6185 -1.3987 27 1 6.2344 -3.3580 0.3895 28 1 6.0956 -0.9772 1.8721 29 1 7.3897 -1.2346 0.6813 30 1 6.1417 -0.0766 -1.0333 31 1 6.1500 0.9505 0.4172 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224140951.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:57 Heat of formation + Delta-G solvation = 11.477394 kcal Electronic energy + Delta-G solvation = -13774.397759 eV Core-core repulsion = 11598.454126 eV Total energy + Delta-G solvation = -2175.943633 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.19833 -35.63540 -33.64629 -31.75036 -30.74093 -28.84741 -26.45208 -24.66203 -22.33536 -21.19875 -20.69773 -18.01163 -16.11622 -15.54013 -15.00839 -14.60763 -14.22084 -13.39936 -13.26237 -12.96428 -12.85192 -12.18853 -11.97739 -11.74145 -11.55356 -11.30377 -11.22610 -10.82727 -10.72078 -10.45045 -10.09460 -9.47756 -9.40958 -9.06120 -8.52702 -7.92328 -6.93052 -6.75280 -4.33808 1.84301 2.04119 3.18610 3.29881 3.42300 3.65261 4.18414 4.51890 5.26771 5.32148 5.35954 5.57163 5.61948 5.70770 5.91289 5.96089 6.07720 6.09820 6.21260 6.26560 6.35258 6.59843 6.71679 6.77215 6.90303 7.05481 7.08512 7.18583 7.25118 7.46375 7.58831 7.94256 8.09357 8.61605 8.77655 9.03676 10.27570 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.030933 B = 0.011760 C = 0.009082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.975810 B = 2380.360517 C = 3082.269492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.103 4.103 3 C -0.140 4.140 4 C -0.124 4.124 5 C -0.086 4.086 6 C -0.013 4.013 7 C -0.104 4.104 8 C 0.072 3.928 9 C -0.446 4.446 10 H 0.085 0.915 11 C 0.085 3.915 12 N -0.824 5.824 13 Si 0.921 3.079 14 H -0.276 1.276 15 H -0.302 1.302 16 H -0.247 1.247 17 C -0.385 4.385 18 C -0.044 4.044 19 C -0.074 4.074 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.126 0.874 26 H 0.281 0.719 27 H 0.092 0.908 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 10.097 0.506 10.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.103 4.103 3 C -0.158 4.158 4 C -0.142 4.142 5 C -0.087 4.087 6 C -0.013 4.013 7 C -0.122 4.122 8 C 0.070 3.930 9 C -0.475 4.475 10 H 0.103 0.897 11 C -0.132 4.132 12 N -0.449 5.449 13 Si 0.749 3.251 14 H -0.203 1.203 15 H -0.231 1.231 16 H -0.171 1.171 17 C -0.407 4.407 18 C -0.081 4.081 19 C -0.111 4.111 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.128 0.872 24 H 0.130 0.870 25 H 0.144 0.856 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.356 9.837 0.448 9.940 hybrid contribution 0.737 -0.056 -0.412 0.846 sum -0.619 9.781 0.035 9.800 Atomic orbital electron populations 1.20710 0.91973 1.02028 1.01704 1.19808 0.95475 0.93335 1.01651 1.20781 0.94001 0.96780 1.04218 1.20766 0.93967 0.96889 1.02580 1.19953 0.95753 0.92521 1.00430 1.19398 0.92850 0.93796 0.95230 1.21147 0.93812 0.97253 0.99960 1.17741 0.91742 0.89837 0.93706 1.19186 0.97496 0.95746 1.35081 0.89690 1.26069 0.99346 0.93761 0.93976 1.69687 1.39089 1.00915 1.35245 0.86069 0.81415 0.80017 0.77555 1.20272 1.23114 1.17066 1.22375 0.97540 0.96173 1.24582 1.19783 0.97604 0.93307 0.97443 1.20378 0.91376 0.98601 1.00777 0.91783 0.91815 0.92300 0.87228 0.87011 0.85646 0.90881 0.89016 0.94046 0.93827 0.91558 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 36.01 0.36 -1.12 16 2 C -0.10 -1.82 5.88 -104.63 -0.62 -2.43 16 3 C -0.14 -2.32 9.69 -39.50 -0.38 -2.70 16 4 C -0.12 -2.17 9.70 -39.64 -0.38 -2.55 16 5 C -0.09 -1.77 5.66 -104.39 -0.59 -2.36 16 6 C -0.01 -0.29 5.75 -104.93 -0.60 -0.90 16 7 C -0.10 -2.18 9.12 -39.32 -0.36 -2.54 16 8 C 0.07 1.86 5.12 -105.33 -0.54 1.32 16 9 C -0.45 -12.38 9.17 -37.89 -0.35 -12.72 16 10 H 0.09 2.43 6.77 -52.48 -0.36 2.07 16 11 C 0.08 2.33 5.39 -17.33 -0.09 2.24 16 12 N -0.82 -22.98 13.93 55.55 0.77 -22.21 16 13 Si 0.92 22.36 24.56 -169.99 -4.18 18.18 16 14 H -0.28 -6.63 6.75 56.52 0.38 -6.25 16 15 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.25 -6.06 6.88 56.52 0.39 -5.68 16 17 C -0.39 -9.58 7.35 -35.15 -0.26 -9.84 16 18 C -0.04 -0.92 6.06 -28.19 -0.17 -1.09 16 19 C -0.07 -1.41 5.91 -28.14 -0.17 -1.58 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 22 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 23 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 24 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 25 H 0.13 2.67 6.67 -52.49 -0.35 2.32 16 26 H 0.28 7.17 8.30 -40.82 -0.34 6.84 16 27 H 0.09 2.38 4.61 -52.48 -0.24 2.14 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 0.92 8.06 -51.93 -0.42 0.51 16 LS Contribution 253.29 15.07 3.82 3.82 Total: -1.00 -28.58 253.29 -7.65 -36.22 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -3.91 Total: 0.27 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: -4.15 Total: -36.29 kcal Atomic # 7 Polarization: -22.98 SS G_CDS: 0.77 Total: -22.21 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.18 Total: 18.18 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.58 -7.65 -36.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224140951.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.700 kcal (2) G-P(sol) polarization free energy of solvation -28.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds