Wall clock time and date at job start Mon Mar 30 2020 02:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38336 * 119.94579 * 2 1 4 4 C 1.38352 * 120.37254 * 180.02562 * 3 2 1 5 5 C 1.37955 * 119.99398 * 0.02562 * 4 3 2 6 6 C 1.39373 * 119.77916 * 359.89644 * 5 4 3 7 7 C 1.38125 * 119.94351 * 179.97438 * 2 1 3 8 8 C 1.48535 * 119.08939 * 180.26170 * 6 5 4 9 9 C 1.40936 * 120.51903 * 198.73055 * 8 6 5 10 10 H 1.08004 * 119.99813 * 330.48235 * 9 8 6 11 11 C 1.40022 * 120.00526 * 150.48201 * 9 8 6 12 12 N 1.30793 * 120.00475 * 161.36219 * 11 9 8 13 13 Si 1.86806 * 119.99837 * 341.36733 * 11 9 8 14 14 H 1.48503 * 109.47248 * 95.33013 * 13 11 9 15 15 H 1.48500 * 109.46997 * 215.32919 * 13 11 9 16 16 H 1.48498 * 109.46998 * 335.32764 * 13 11 9 17 17 C 1.36297 * 118.96652 * 18.75128 * 8 6 5 18 18 C 1.50411 * 120.46561 * 0.63193 * 17 8 6 19 19 C 1.50518 * 120.56745 * 179.76346 * 5 4 3 20 20 H 1.08997 * 109.47346 * 90.00159 * 1 2 3 21 21 H 1.09001 * 109.47050 * 210.00338 * 1 2 3 22 22 H 1.09000 * 109.47164 * 330.00027 * 1 2 3 23 23 H 1.08006 * 119.81335 * 0.30156 * 3 2 1 24 24 H 1.08004 * 119.99963 * 179.97438 * 4 3 2 25 25 H 1.08001 * 120.16733 * 0.02562 * 7 2 1 26 26 H 0.96997 * 120.00285 * 179.97438 * 12 11 9 27 27 H 1.08007 * 119.76730 * 180.61300 * 17 8 6 28 28 H 1.08996 * 109.22866 * 84.30167 * 18 17 8 29 29 H 1.08996 * 109.23681 * 203.72418 * 18 17 8 30 30 H 1.09002 * 109.35818 * 264.99221 * 19 5 4 31 31 H 1.09001 * 109.35319 * 24.56399 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1987 0.0000 4 6 3.5810 1.2090 -0.0005 5 6 4.2795 0.0194 -0.0016 6 6 3.5869 -1.1901 0.0000 7 6 2.1964 -1.1969 0.0005 8 6 4.3544 -2.4618 0.0048 9 6 3.7405 -3.6696 -0.3833 10 1 2.6806 -3.8100 -0.2307 11 6 4.5047 -4.6876 -0.9666 12 7 4.0492 -5.9134 -0.9943 13 14 6.1751 -4.2951 -1.7052 14 1 7.2361 -4.5683 -0.7029 15 1 6.3973 -5.1421 -2.9046 16 1 6.2195 -2.8630 -2.0955 17 6 5.6614 -2.4425 0.3907 18 6 6.3113 -1.1553 0.8186 19 6 5.7847 0.0155 -0.0075 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6536 2.1318 0.0049 24 1 4.1141 2.1483 -0.0009 25 1 1.6582 -2.1332 0.0005 26 1 4.5784 -6.6185 -1.3987 27 1 6.2344 -3.3580 0.3895 28 1 6.0956 -0.9772 1.8721 29 1 7.3897 -1.2346 0.6813 30 1 6.1417 -0.0766 -1.0333 31 1 6.1500 0.9505 0.4172 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224140951.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:57 Heat of formation + Delta-G solvation = -4.065618 kcal Electronic energy + Delta-G solvation = -13775.071754 eV Core-core repulsion = 11598.454126 eV Total energy + Delta-G solvation = -2176.617629 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71301 -37.27823 -35.49564 -33.46253 -32.21197 -30.48270 -27.94452 -26.42793 -23.86184 -22.78968 -22.37479 -19.78199 -17.90682 -17.34430 -16.56266 -16.25251 -15.76380 -14.98894 -14.81787 -14.48319 -14.40183 -13.79785 -13.54601 -13.28771 -13.11388 -12.94194 -12.74682 -12.56359 -12.34074 -12.01466 -11.84949 -11.33773 -11.23596 -10.83205 -10.28553 -9.37954 -8.82941 -8.67697 -6.45264 0.28689 0.58242 1.23406 1.29902 1.47369 1.80241 2.18623 2.83992 3.33948 3.96257 4.02876 4.14901 4.23099 4.37102 4.51366 4.63783 4.73108 4.73645 4.86541 4.87492 5.02397 5.05491 5.20360 5.24851 5.28155 5.36546 5.45765 5.61520 5.71929 5.83795 5.87644 6.03773 6.31928 6.57808 6.79548 6.98255 8.25617 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.030933 B = 0.011760 C = 0.009082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.975810 B = 2380.360517 C = 3082.269492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.057 4.057 7 C -0.128 4.128 8 C 0.056 3.944 9 C -0.479 4.479 10 H 0.054 0.946 11 C 0.044 3.956 12 N -0.864 5.864 13 Si 0.974 3.026 14 H -0.271 1.271 15 H -0.288 1.288 16 H -0.251 1.251 17 C -0.382 4.382 18 C -0.049 4.049 19 C -0.072 4.072 20 H 0.075 0.925 21 H 0.058 0.942 22 H 0.089 0.911 23 H 0.154 0.846 24 H 0.153 0.847 25 H 0.100 0.900 26 H 0.288 0.712 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 13.885 0.532 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.102 4.102 6 C -0.057 4.057 7 C -0.146 4.146 8 C 0.054 3.946 9 C -0.509 4.509 10 H 0.072 0.928 11 C -0.168 4.168 12 N -0.492 5.492 13 Si 0.799 3.201 14 H -0.197 1.197 15 H -0.216 1.216 16 H -0.175 1.175 17 C -0.403 4.403 18 C -0.086 4.086 19 C -0.109 4.109 20 H 0.094 0.906 21 H 0.077 0.923 22 H 0.108 0.892 23 H 0.172 0.828 24 H 0.171 0.829 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.672 13.626 0.477 13.651 hybrid contribution 0.434 -1.126 -0.333 1.252 sum -0.238 12.500 0.145 12.503 Atomic orbital electron populations 1.20778 0.89297 1.03329 1.02857 1.20212 0.97527 0.92509 1.00103 1.21317 0.94117 0.97759 1.01320 1.21220 0.94529 0.97217 1.00410 1.20222 0.96690 0.92480 1.00795 1.19441 0.93690 0.93733 0.98862 1.21137 0.93619 0.97994 1.01863 1.17986 0.92680 0.90610 0.93332 1.19283 0.96398 0.97733 1.37498 0.92832 1.26768 1.02334 0.93522 0.94154 1.69725 1.40775 1.01660 1.37047 0.85271 0.77918 0.79575 0.77287 1.19723 1.21624 1.17498 1.22767 0.97210 0.97727 1.22594 1.19876 0.98581 0.91994 0.98152 1.20409 0.90515 0.99443 1.00504 0.90590 0.92343 0.89225 0.82840 0.82923 0.88212 0.90149 0.90728 0.93265 0.91693 0.91879 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.67 10.01 71.24 0.71 -1.95 16 2 C -0.10 -3.46 5.88 -19.87 -0.12 -3.58 16 3 C -0.13 -3.64 9.69 22.32 0.22 -3.42 16 4 C -0.12 -3.51 9.70 22.23 0.22 -3.30 16 5 C -0.10 -3.92 5.66 -19.72 -0.11 -4.03 16 6 C -0.06 -2.67 5.75 -20.06 -0.12 -2.79 16 7 C -0.13 -5.54 9.12 22.44 0.20 -5.33 16 8 C 0.06 2.99 5.12 -20.32 -0.10 2.88 16 9 C -0.48 -28.39 9.17 23.36 0.21 -28.18 16 10 H 0.05 3.38 6.77 -2.91 -0.02 3.36 16 11 C 0.04 2.54 5.39 85.28 0.46 3.00 16 12 N -0.86 -50.72 13.93 21.84 0.30 -50.41 16 13 Si 0.97 47.14 24.56 68.60 1.69 48.83 16 14 H -0.27 -12.75 6.75 99.48 0.67 -12.08 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 16 H -0.25 -12.17 6.88 99.48 0.68 -11.49 16 17 C -0.38 -19.08 7.35 25.14 0.18 -18.90 16 18 C -0.05 -1.94 6.06 29.65 0.18 -1.76 16 19 C -0.07 -2.49 5.91 29.68 0.18 -2.32 16 20 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.06 1.52 8.08 -2.39 -0.02 1.50 16 22 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 23 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 24 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 25 H 0.10 4.66 6.67 -2.91 -0.02 4.64 16 26 H 0.29 15.35 8.30 -92.71 -0.77 14.58 16 27 H 0.07 3.92 4.61 -2.91 -0.01 3.91 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.10 2.64 8.06 -2.39 -0.02 2.62 16 Total: -1.00 -65.66 253.29 5.16 -60.50 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.06 Total: 10.75 kcal Atomic # 6 Polarization: -71.78 SS G_CDS: 2.12 Total: -69.66 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.30 Total: -50.41 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.69 Total: 48.83 kcal Total: -65.66 5.16 -60.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224140951.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.432 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds