Wall clock time and date at job start Mon Mar 30 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47348 * 2 1 4 4 C 1.50699 * 109.47051 * 298.47254 * 3 2 1 5 5 H 1.08004 * 119.99901 * 4.98533 * 4 3 2 6 6 C 1.37877 * 120.00104 * 184.99612 * 4 3 2 7 7 N 1.31514 * 119.99837 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00058 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47223 * 59.99734 * 8 6 4 10 10 H 1.48505 * 109.46741 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47073 * 299.99463 * 8 6 4 12 12 C 1.52995 * 109.47048 * 120.00120 * 2 1 3 13 13 H 1.09000 * 109.47420 * 179.97438 * 12 2 1 14 14 O 1.42902 * 109.47092 * 299.99844 * 12 2 1 15 15 C 1.52994 * 109.47488 * 59.99916 * 12 2 1 16 16 C 1.52996 * 109.47088 * 60.00047 * 15 12 2 17 17 C 1.53007 * 109.47158 * 300.00254 * 16 15 12 18 18 C 1.52994 * 109.46833 * 59.99697 * 17 16 15 19 19 H 1.09008 * 109.47166 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.47142 * 60.00582 * 18 17 16 21 21 H 1.09008 * 109.46596 * 59.99944 * 1 2 3 22 22 H 1.09000 * 109.46860 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47235 * 300.00402 * 1 2 3 24 24 H 1.09003 * 109.46808 * 58.46876 * 3 2 1 25 25 H 1.09001 * 109.47320 * 178.46998 * 3 2 1 26 26 H 0.97002 * 120.00126 * 179.97438 * 7 6 4 27 27 H 0.96703 * 114.00451 * 179.97438 * 14 12 2 28 28 H 1.09003 * 109.47342 * 300.00427 * 15 12 2 29 29 H 1.08995 * 109.47885 * 180.02562 * 15 12 2 30 30 H 1.09000 * 109.47558 * 180.02562 * 16 15 12 31 31 H 1.08998 * 109.47583 * 60.00016 * 16 15 12 32 32 H 1.08996 * 109.46760 * 299.99541 * 17 16 15 33 33 H 1.09002 * 109.46917 * 180.02562 * 17 16 15 34 34 H 0.96698 * 114.00579 * 59.99215 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5689 2.1419 -1.2490 5 1 0.9003 1.6374 -1.9308 6 6 1.9917 3.4257 -1.5214 7 7 2.8057 4.0401 -0.6910 8 14 1.4082 4.2924 -3.0699 9 1 -0.0728 4.3991 -3.0493 10 1 2.0013 5.6525 -3.1292 11 1 1.8320 3.5147 -4.2619 12 6 2.0400 -0.7213 1.2492 13 1 3.1300 -0.7217 1.2490 14 8 1.5637 -0.0476 2.4160 15 6 1.5300 -2.1637 1.2492 16 6 2.0400 -2.8850 0.0001 17 6 1.5300 -2.1637 -1.2493 18 6 2.0400 -0.7213 -1.2492 19 1 1.6771 -0.2075 -2.1395 20 8 3.4690 -0.7213 -1.2492 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.6545 1.9642 0.8760 25 1 3.1298 1.4426 0.0274 26 1 3.1034 4.9431 -0.8828 27 1 1.8486 -0.4513 3.2472 28 1 0.4400 -2.1638 1.2492 29 1 1.8929 -2.6775 2.1394 30 1 1.6764 -3.9125 -0.0002 31 1 3.1300 -2.8850 0.0000 32 1 0.4401 -2.1638 -1.2493 33 1 1.8930 -2.6779 -2.1392 34 1 3.8624 -1.1630 -2.0142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238254018.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:51 Heat of formation + Delta-G solvation = -121.706365 kcal Electronic energy + Delta-G solvation = -15737.431391 eV Core-core repulsion = 13248.403557 eV Total energy + Delta-G solvation = -2489.027834 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.55780 -35.95112 -33.83455 -33.52854 -31.54325 -28.70351 -26.83785 -25.51091 -23.19339 -21.90447 -20.38474 -17.75949 -16.72455 -16.55342 -15.75309 -15.06878 -14.56786 -14.12137 -13.60668 -13.46895 -12.66091 -12.55798 -12.11699 -11.99575 -11.38586 -11.30300 -11.24560 -10.96619 -10.83094 -10.70359 -10.52025 -10.14709 -9.89786 -9.61438 -9.40242 -9.21145 -8.69464 -8.57218 -8.18898 -5.84842 -3.84967 3.38670 3.43541 3.44825 4.55051 4.78622 4.90683 5.11967 5.27633 5.36351 5.49178 5.62943 5.74578 5.81504 5.92174 5.99921 6.15564 6.21296 6.26389 6.29122 6.50846 6.61226 6.62179 6.76352 6.98229 7.21410 7.31074 7.88326 8.09802 8.20802 8.27512 8.39256 8.57670 9.20989 9.75709 11.26708 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.038264 B = 0.010504 C = 0.009565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.578553 B = 2664.945041 C = 2926.507847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.035 4.035 3 C 0.042 3.958 4 C -0.509 4.509 5 H 0.053 0.947 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.279 1.279 12 C 0.116 3.884 13 H 0.056 0.944 14 O -0.557 6.557 15 C -0.153 4.153 16 C -0.108 4.108 17 C -0.160 4.160 18 C 0.124 3.876 19 H 0.068 0.932 20 O -0.553 6.553 21 H 0.060 0.940 22 H 0.035 0.965 23 H 0.058 0.942 24 H 0.019 0.981 25 H 0.025 0.975 26 H 0.258 0.742 27 H 0.361 0.639 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -13.016 1.022 13.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.036 4.036 3 C 0.005 3.995 4 C -0.547 4.547 5 H 0.071 0.929 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.205 1.205 12 C 0.058 3.942 13 H 0.074 0.926 14 O -0.361 6.361 15 C -0.190 4.190 16 C -0.146 4.146 17 C -0.198 4.198 18 C 0.066 3.934 19 H 0.086 0.914 20 O -0.356 6.356 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.206 0.794 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.030 -12.120 1.157 12.343 hybrid contribution 0.046 -0.198 -1.020 1.040 sum -1.984 -12.318 0.137 12.477 Atomic orbital electron populations 1.21796 0.94857 0.99165 1.02691 1.20491 0.94930 0.98820 0.89318 1.19011 0.96797 0.87072 0.96634 1.21200 1.27751 0.98886 1.06875 0.92938 1.24976 0.95378 0.97634 0.96383 1.69970 1.33921 1.13053 1.36428 0.86785 0.78900 0.78879 0.84123 1.20431 1.21434 1.20498 1.21854 0.97069 0.89111 0.86203 0.92633 1.86647 1.77418 1.56716 1.15279 1.22331 1.01725 0.97380 0.97592 1.21328 1.01155 0.97673 0.94413 1.22441 1.01718 0.98118 0.97539 1.21784 0.80508 0.91875 0.99271 0.91411 1.86607 1.19810 1.81071 1.48100 0.92126 0.94605 0.92249 0.96221 0.95634 0.93223 0.79394 0.91357 0.92864 0.92891 0.91587 0.91067 0.92532 0.79448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 7.40 37.16 0.28 -2.27 16 2 C -0.04 -0.75 0.19 -154.51 -0.03 -0.78 16 3 C 0.04 1.13 3.71 -27.88 -0.10 1.03 16 4 C -0.51 -14.46 7.64 -34.44 -0.26 -14.72 16 5 H 0.05 1.43 5.70 -52.48 -0.30 1.13 16 6 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 7 N -0.89 -27.81 13.29 55.43 0.74 -27.08 16 8 Si 0.88 22.09 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.12 2.17 2.44 -26.74 -0.07 2.11 16 13 H 0.06 1.12 7.68 -51.93 -0.40 0.72 16 14 O -0.56 -10.45 12.00 -35.23 -0.42 -10.87 16 15 C -0.15 -2.25 5.27 -26.74 -0.14 -2.39 16 16 C -0.11 -1.48 5.78 -26.73 -0.15 -1.64 16 17 C -0.16 -2.35 5.36 -26.73 -0.14 -2.50 16 18 C 0.12 2.35 2.46 -26.74 -0.07 2.28 16 19 H 0.07 1.40 6.63 -51.92 -0.34 1.05 16 20 O -0.55 -10.53 11.32 -35.23 -0.40 -10.92 16 21 H 0.06 1.25 6.62 -51.92 -0.34 0.91 16 22 H 0.04 0.60 4.81 -51.93 -0.25 0.35 16 23 H 0.06 1.24 7.68 -51.93 -0.40 0.84 16 24 H 0.02 0.59 7.73 -51.93 -0.40 0.18 16 25 H 0.03 0.77 7.73 -51.93 -0.40 0.36 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.36 4.86 9.08 45.56 0.41 5.27 16 28 H 0.07 1.02 6.43 -51.93 -0.33 0.68 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 32 H 0.07 1.02 6.43 -51.93 -0.33 0.69 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.36 5.11 9.08 45.56 0.41 5.52 16 LS Contribution 259.18 15.07 3.91 3.91 Total: -1.00 -33.09 259.18 -5.47 -38.55 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -3.48 Total: 6.66 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.79 Total: -17.30 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.74 Total: -27.08 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.82 Total: -21.80 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.09 -5.47 -38.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238254018.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.152 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds