Wall clock time and date at job start Mon Mar 30 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47348 * 2 1 4 4 C 1.50699 * 109.47051 * 298.47254 * 3 2 1 5 5 H 1.08004 * 119.99901 * 4.98533 * 4 3 2 6 6 C 1.37877 * 120.00104 * 184.99612 * 4 3 2 7 7 N 1.31514 * 119.99837 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00058 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47223 * 59.99734 * 8 6 4 10 10 H 1.48505 * 109.46741 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47073 * 299.99463 * 8 6 4 12 12 C 1.52995 * 109.47048 * 120.00120 * 2 1 3 13 13 H 1.09000 * 109.47420 * 179.97438 * 12 2 1 14 14 O 1.42902 * 109.47092 * 299.99844 * 12 2 1 15 15 C 1.52994 * 109.47488 * 59.99916 * 12 2 1 16 16 C 1.52996 * 109.47088 * 60.00047 * 15 12 2 17 17 C 1.53007 * 109.47158 * 300.00254 * 16 15 12 18 18 C 1.52994 * 109.46833 * 59.99697 * 17 16 15 19 19 H 1.09008 * 109.47166 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.47142 * 60.00582 * 18 17 16 21 21 H 1.09008 * 109.46596 * 59.99944 * 1 2 3 22 22 H 1.09000 * 109.46860 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47235 * 300.00402 * 1 2 3 24 24 H 1.09003 * 109.46808 * 58.46876 * 3 2 1 25 25 H 1.09001 * 109.47320 * 178.46998 * 3 2 1 26 26 H 0.97002 * 120.00126 * 179.97438 * 7 6 4 27 27 H 0.96703 * 114.00451 * 179.97438 * 14 12 2 28 28 H 1.09003 * 109.47342 * 300.00427 * 15 12 2 29 29 H 1.08995 * 109.47885 * 180.02562 * 15 12 2 30 30 H 1.09000 * 109.47558 * 180.02562 * 16 15 12 31 31 H 1.08998 * 109.47583 * 60.00016 * 16 15 12 32 32 H 1.08996 * 109.46760 * 299.99541 * 17 16 15 33 33 H 1.09002 * 109.46917 * 180.02562 * 17 16 15 34 34 H 0.96698 * 114.00579 * 59.99215 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5689 2.1419 -1.2490 5 1 0.9003 1.6374 -1.9308 6 6 1.9917 3.4257 -1.5214 7 7 2.8057 4.0401 -0.6910 8 14 1.4082 4.2924 -3.0699 9 1 -0.0728 4.3991 -3.0493 10 1 2.0013 5.6525 -3.1292 11 1 1.8320 3.5147 -4.2619 12 6 2.0400 -0.7213 1.2492 13 1 3.1300 -0.7217 1.2490 14 8 1.5637 -0.0476 2.4160 15 6 1.5300 -2.1637 1.2492 16 6 2.0400 -2.8850 0.0001 17 6 1.5300 -2.1637 -1.2493 18 6 2.0400 -0.7213 -1.2492 19 1 1.6771 -0.2075 -2.1395 20 8 3.4690 -0.7213 -1.2492 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.6545 1.9642 0.8760 25 1 3.1298 1.4426 0.0274 26 1 3.1034 4.9431 -0.8828 27 1 1.8486 -0.4513 3.2472 28 1 0.4400 -2.1638 1.2492 29 1 1.8929 -2.6775 2.1394 30 1 1.6764 -3.9125 -0.0002 31 1 3.1300 -2.8850 0.0000 32 1 0.4401 -2.1638 -1.2493 33 1 1.8930 -2.6779 -2.1392 34 1 3.8624 -1.1630 -2.0142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238254018.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:51 Heat of formation + Delta-G solvation = -148.507990 kcal Electronic energy + Delta-G solvation = -15738.593597 eV Core-core repulsion = 13248.403557 eV Total energy + Delta-G solvation = -2490.190039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.02490 -37.41523 -35.62501 -35.07927 -33.43853 -30.00485 -28.87694 -27.10031 -25.06689 -23.34030 -21.84271 -19.31930 -18.47885 -18.17885 -17.48988 -16.72163 -16.22000 -15.68707 -15.04939 -14.95005 -14.11754 -14.06883 -13.97964 -13.76344 -13.00496 -12.79639 -12.76805 -12.68490 -12.60482 -12.38974 -12.12038 -11.80118 -11.49501 -11.29333 -11.06705 -10.81125 -10.51125 -10.41857 -10.17955 -8.11551 -6.20229 1.38110 1.42108 1.49172 2.43427 3.21003 3.46314 3.55316 3.86782 4.01663 4.16170 4.30509 4.34436 4.47015 4.56194 4.68399 4.81626 4.90683 4.98795 5.05960 5.17785 5.19368 5.25596 5.41048 5.44555 5.49284 5.60212 5.67127 5.88780 5.96203 6.33089 6.93456 7.07048 7.15043 7.46131 9.01053 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.038264 B = 0.010504 C = 0.009565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.578553 B = 2664.945041 C = 2926.507847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.042 4.042 3 C 0.055 3.945 4 C -0.517 4.517 5 H 0.065 0.935 6 C -0.007 4.007 7 N -0.939 5.939 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.288 1.288 11 H -0.265 1.265 12 C 0.117 3.883 13 H 0.032 0.968 14 O -0.582 6.582 15 C -0.143 4.143 16 C -0.106 4.106 17 C -0.150 4.150 18 C 0.124 3.876 19 H 0.045 0.955 20 O -0.576 6.576 21 H 0.046 0.954 22 H 0.075 0.925 23 H 0.039 0.961 24 H -0.025 1.025 25 H -0.020 1.020 26 H 0.259 0.741 27 H 0.383 0.617 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 -15.406 -0.178 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.042 4.042 3 C 0.018 3.982 4 C -0.555 4.555 5 H 0.083 0.917 6 C -0.204 4.204 7 N -0.580 5.580 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.190 1.190 12 C 0.058 3.942 13 H 0.050 0.950 14 O -0.389 6.389 15 C -0.180 4.180 16 C -0.143 4.143 17 C -0.188 4.188 18 C 0.066 3.934 19 H 0.063 0.937 20 O -0.382 6.382 21 H 0.065 0.935 22 H 0.093 0.907 23 H 0.059 0.941 24 H -0.007 1.007 25 H -0.002 1.002 26 H 0.067 0.933 27 H 0.231 0.769 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.214 -14.545 -0.045 14.896 hybrid contribution 0.476 0.576 -0.576 0.943 sum -2.738 -13.969 -0.621 14.248 Atomic orbital electron populations 1.21699 0.93716 1.01173 1.01055 1.20457 0.95884 0.95427 0.92403 1.18757 0.93715 0.91259 0.94475 1.21595 1.27437 0.99190 1.07255 0.91706 1.25996 0.95497 0.98715 1.00153 1.70150 1.35584 1.13461 1.38854 0.85583 0.78796 0.77410 0.79743 1.19151 1.21321 1.18956 1.21754 0.95742 0.91571 0.85103 0.94997 1.86595 1.77595 1.58087 1.16615 1.22244 1.01914 0.94214 0.99651 1.21364 1.00995 0.99053 0.92933 1.22343 1.02106 0.94790 0.99527 1.21668 0.80472 0.94635 0.96655 0.93745 1.86568 1.20240 1.81872 1.49565 0.93458 0.90667 0.94136 1.00711 1.00151 0.93266 0.76853 0.90766 0.90276 0.89437 0.92028 0.90165 0.89796 0.77109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 7.40 71.98 0.53 -4.13 16 2 C -0.04 -1.77 0.19 -52.18 -0.01 -1.78 16 3 C 0.05 3.14 3.71 29.85 0.11 3.26 16 4 C -0.52 -30.24 7.64 25.60 0.20 -30.04 16 5 H 0.06 3.56 5.70 -2.91 -0.02 3.54 16 6 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 7 N -0.94 -60.81 13.29 21.45 0.28 -60.53 16 8 Si 0.96 45.88 29.54 68.60 2.03 47.91 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 12 C 0.12 4.34 2.44 30.59 0.07 4.41 16 13 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 14 O -0.58 -22.11 12.00 -148.98 -1.79 -23.90 16 15 C -0.14 -3.74 5.27 30.59 0.16 -3.58 16 16 C -0.11 -2.45 5.78 30.60 0.18 -2.28 16 17 C -0.15 -3.85 5.36 30.59 0.16 -3.68 16 18 C 0.12 4.59 2.46 30.59 0.08 4.66 16 19 H 0.04 1.81 6.63 -2.38 -0.02 1.80 16 20 O -0.58 -21.91 11.32 -148.98 -1.69 -23.60 16 21 H 0.05 1.93 6.62 -2.38 -0.02 1.91 16 22 H 0.07 2.31 4.81 -2.39 -0.01 2.30 16 23 H 0.04 1.70 7.68 -2.39 -0.02 1.68 16 24 H -0.03 -1.65 7.73 -2.39 -0.02 -1.67 16 25 H -0.02 -1.30 7.73 -2.39 -0.02 -1.32 16 26 H 0.26 15.80 8.31 -92.71 -0.77 15.02 16 27 H 0.38 10.16 9.08 -74.06 -0.67 9.49 16 28 H 0.07 1.89 6.43 -2.39 -0.02 1.88 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.51 7.68 -2.39 -0.02 1.49 16 32 H 0.08 1.94 6.43 -2.39 -0.02 1.92 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.38 10.42 9.08 -74.06 -0.67 9.75 16 Total: -1.00 -75.40 259.18 0.54 -74.86 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.24 Total: 18.40 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 1.94 Total: -33.14 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.28 Total: -60.53 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -3.47 Total: -47.50 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -75.40 0.54 -74.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238254018.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.650 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds