Wall clock time and date at job start Mon Mar 30 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50706 * 109.46573 * 60.00269 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72054 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48507 * 109.46754 * 210.00056 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 C 1.52997 * 109.47232 * 120.00396 * 2 1 3 13 13 H 1.09002 * 109.47153 * 299.99992 * 12 2 1 14 14 O 1.42898 * 109.47319 * 179.97438 * 12 2 1 15 15 C 1.53002 * 109.46817 * 59.99761 * 12 2 1 16 16 C 1.52996 * 109.47346 * 60.00263 * 15 12 2 17 17 C 1.53005 * 109.47245 * 299.99999 * 16 15 12 18 18 C 1.52993 * 109.46886 * 59.99636 * 17 16 15 19 19 H 1.08996 * 109.47340 * 60.00744 * 18 17 16 20 20 O 1.42900 * 109.47054 * 180.02562 * 18 17 16 21 21 H 1.09000 * 109.47140 * 59.99453 * 1 2 3 22 22 H 1.09001 * 109.47375 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47497 * 299.99829 * 1 2 3 24 24 H 1.09000 * 109.47486 * 300.00335 * 3 2 1 25 25 H 1.09001 * 109.47362 * 179.97438 * 3 2 1 26 26 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 27 27 H 0.96698 * 114.00171 * 180.02562 * 14 12 2 28 28 H 1.08996 * 109.47407 * 299.99780 * 15 12 2 29 29 H 1.09000 * 109.46986 * 180.02562 * 15 12 2 30 30 H 1.09001 * 109.47367 * 179.97438 * 16 15 12 31 31 H 1.09004 * 109.47108 * 59.99711 * 16 15 12 32 32 H 1.08996 * 109.46524 * 299.99880 * 17 16 15 33 33 H 1.08992 * 109.47199 * 180.02562 * 17 16 15 34 34 H 0.96700 * 113.99855 * 300.00192 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5377 2.1528 1.2306 5 1 0.9131 1.6292 1.9392 6 6 1.8712 3.4727 1.4490 7 7 2.6273 4.1118 0.5834 8 14 1.2492 4.3529 2.9747 9 1 2.2275 4.1815 4.0787 10 1 1.0845 5.7989 2.6793 11 1 -0.0591 3.7782 3.3790 12 6 2.0400 -0.7213 1.2492 13 1 1.6767 -0.2075 2.1392 14 8 3.4690 -0.7219 1.2489 15 6 1.5299 -2.1638 1.2490 16 6 2.0399 -2.8850 -0.0002 17 6 1.5299 -2.1637 -1.2495 18 6 2.0400 -0.7213 -1.2493 19 1 3.1299 -0.7213 -1.2494 20 8 1.5632 -0.0473 -2.4158 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.6767 1.9564 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 2.8616 5.0405 0.7369 27 1 3.8623 -1.1640 2.0137 28 1 0.4399 -2.1638 1.2491 29 1 1.8929 -2.6776 2.1392 30 1 1.6768 -3.9128 -0.0001 31 1 3.1299 -2.8850 -0.0002 32 1 0.4400 -2.1637 -1.2494 33 1 1.8928 -2.6777 -2.1394 34 1 1.8482 -0.4507 -3.2471 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238254061.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:53 Heat of formation + Delta-G solvation = -148.673124 kcal Electronic energy + Delta-G solvation = -15732.408752 eV Core-core repulsion = 13242.211551 eV Total energy + Delta-G solvation = -2490.197200 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.02707 -37.41882 -35.63113 -35.08014 -33.43711 -30.00608 -28.87400 -27.10810 -25.06400 -23.34737 -21.84131 -19.31982 -18.48489 -18.18027 -17.49405 -16.72602 -16.20950 -15.69163 -15.05319 -14.95247 -14.13797 -14.06375 -13.97843 -13.76359 -13.00747 -12.80006 -12.75774 -12.68666 -12.60629 -12.38388 -12.11111 -11.79362 -11.51689 -11.29010 -11.06402 -10.81511 -10.51095 -10.42017 -10.18171 -8.11973 -6.20544 1.38101 1.40411 1.50583 2.43200 3.20750 3.46356 3.54976 3.86765 4.01336 4.16202 4.30310 4.34463 4.46848 4.56265 4.68163 4.81615 4.90190 4.99065 5.06127 5.17820 5.19447 5.25573 5.40963 5.45123 5.49247 5.60383 5.67346 5.89185 5.96250 6.32899 6.93326 7.07181 7.14721 7.45874 9.00846 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.038314 B = 0.010467 C = 0.009519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.629928 B = 2674.541662 C = 2940.708677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.041 4.041 3 C 0.054 3.946 4 C -0.515 4.515 5 H 0.065 0.935 6 C -0.008 4.008 7 N -0.940 5.940 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.259 1.259 12 C 0.124 3.876 13 H 0.045 0.955 14 O -0.576 6.576 15 C -0.150 4.150 16 C -0.106 4.106 17 C -0.143 4.143 18 C 0.117 3.883 19 H 0.033 0.967 20 O -0.582 6.582 21 H 0.039 0.961 22 H 0.074 0.926 23 H 0.046 0.954 24 H -0.022 1.022 25 H -0.022 1.022 26 H 0.259 0.741 27 H 0.382 0.618 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 -15.554 0.363 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.042 4.042 3 C 0.017 3.983 4 C -0.553 4.553 5 H 0.083 0.917 6 C -0.205 4.205 7 N -0.581 5.581 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.183 1.183 12 C 0.065 3.935 13 H 0.063 0.937 14 O -0.383 6.383 15 C -0.187 4.187 16 C -0.143 4.143 17 C -0.180 4.180 18 C 0.058 3.942 19 H 0.051 0.949 20 O -0.389 6.389 21 H 0.058 0.942 22 H 0.093 0.907 23 H 0.065 0.935 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.067 0.933 27 H 0.230 0.770 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.930 -14.691 0.223 14.982 hybrid contribution 0.454 0.599 0.552 0.932 sum -2.476 -14.092 0.774 14.329 Atomic orbital electron populations 1.21687 0.93740 1.01082 1.01048 1.20456 0.95885 0.95400 0.92423 1.18766 0.93570 0.91302 0.94641 1.21629 1.30043 0.96386 1.07281 0.91673 1.26003 0.95734 0.98850 0.99868 1.70157 1.38978 1.11015 1.37946 0.85523 0.79154 0.77462 0.79363 1.19902 1.21238 1.18350 1.21672 0.80484 0.94698 0.96646 0.93719 1.86566 1.20198 1.81850 1.49642 1.22338 1.02097 0.94767 0.99542 1.21363 1.01013 0.99044 0.92915 1.22243 1.01900 0.94219 0.99671 1.21755 0.95755 0.91556 0.85111 0.94940 1.86601 1.77583 1.58093 1.16622 0.94230 0.90714 0.93461 1.00402 1.00391 0.93271 0.77044 0.90202 0.89745 0.89445 0.91990 0.90805 0.90275 0.76867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 7.38 71.98 0.53 -4.13 16 2 C -0.04 -1.77 0.19 -52.18 -0.01 -1.78 16 3 C 0.05 3.10 3.75 29.85 0.11 3.21 16 4 C -0.52 -30.16 7.65 25.60 0.20 -29.96 16 5 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 6 C -0.01 -0.50 5.46 84.66 0.46 -0.03 16 7 N -0.94 -60.86 13.29 21.45 0.28 -60.58 16 8 Si 0.96 45.94 29.54 68.60 2.03 47.96 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 C 0.12 4.53 2.48 30.59 0.08 4.61 16 13 H 0.04 1.81 6.62 -2.39 -0.02 1.79 16 14 O -0.58 -21.63 11.29 -148.98 -1.68 -23.31 16 15 C -0.15 -3.82 5.36 30.59 0.16 -3.65 16 16 C -0.11 -2.44 5.78 30.59 0.18 -2.26 16 17 C -0.14 -3.74 5.27 30.59 0.16 -3.58 16 18 C 0.12 4.33 2.44 30.59 0.07 4.40 16 19 H 0.03 1.33 7.68 -2.39 -0.02 1.32 16 20 O -0.58 -22.21 11.97 -148.98 -1.78 -23.99 16 21 H 0.04 1.67 7.68 -2.39 -0.02 1.65 16 22 H 0.07 2.31 4.81 -2.39 -0.01 2.30 16 23 H 0.05 1.95 6.61 -2.39 -0.02 1.93 16 24 H -0.02 -1.46 7.68 -2.39 -0.02 -1.48 16 25 H -0.02 -1.45 7.68 -2.39 -0.02 -1.47 16 26 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 27 H 0.38 10.21 9.08 -74.06 -0.67 9.54 16 28 H 0.08 1.92 6.43 -2.39 -0.02 1.91 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.51 7.68 -2.38 -0.02 1.49 16 32 H 0.07 1.89 6.43 -2.39 -0.02 1.87 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.38 10.21 9.08 -74.06 -0.67 9.53 16 Total: -1.00 -75.50 259.05 0.55 -74.95 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.24 Total: 18.14 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 1.94 Total: -33.18 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.28 Total: -60.58 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -3.47 Total: -47.30 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -75.50 0.55 -74.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238254061.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.725 kcal (2) G-P(sol) polarization free energy of solvation -75.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds