Wall clock time and date at job start Mon Mar 30 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00263 * 2 1 4 4 H 1.48497 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46857 * 299.99970 * 3 2 1 6 6 H 1.48501 * 109.47391 * 59.99363 * 3 2 1 7 7 C 1.37877 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00552 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99746 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.47180 * 300.00120 * 9 7 2 11 11 O 1.42896 * 109.47381 * 59.99643 * 9 7 2 12 12 C 1.52998 * 109.47542 * 180.02562 * 9 7 2 13 13 O 1.42894 * 109.47488 * 175.00134 * 12 9 7 14 14 C 1.42900 * 114.00094 * 179.97438 * 13 12 9 15 15 C 1.52999 * 109.47616 * 270.00173 * 14 13 12 16 16 C 1.52997 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 20 20 H 0.97001 * 119.99685 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00152 * 60.00122 * 11 9 7 22 22 H 1.08998 * 109.47138 * 54.99184 * 12 9 7 23 23 H 1.09005 * 109.46876 * 295.00203 * 12 9 7 24 24 H 1.09002 * 109.47002 * 29.99905 * 14 13 12 25 25 H 1.08996 * 109.46929 * 59.99102 * 15 14 13 26 26 H 1.09002 * 109.46716 * 299.99907 * 15 14 13 27 27 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 28 28 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 29 29 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 30 30 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 31 31 H 1.08993 * 109.47662 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.47075 * 300.00932 * 18 17 16 33 33 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 34 34 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1664 12 6 2.2452 -3.6621 0.0018 13 8 1.5345 -4.8962 0.1192 14 6 2.3747 -6.0521 0.1296 15 6 2.5796 -6.5467 -1.3036 16 6 3.4797 -7.7838 -1.2925 17 6 2.8205 -8.8866 -0.4618 18 6 2.6156 -8.3921 0.9715 19 6 1.7155 -7.1550 0.9604 20 1 -0.4850 0.8401 -0.0004 21 1 0.9222 -2.5300 -1.9975 22 1 2.9287 -3.5548 0.8440 23 1 2.8121 -3.6565 -0.9292 24 1 3.3396 -5.7959 0.5670 25 1 3.0496 -5.7611 -1.8953 26 1 1.6147 -6.8029 -1.7410 27 1 4.4447 -7.5272 -0.8552 28 1 3.6253 -8.1364 -2.3136 29 1 1.8556 -9.1433 -0.8990 30 1 3.4620 -9.7679 -0.4535 31 1 2.1463 -9.1779 1.5635 32 1 3.5805 -8.1354 1.4087 33 1 0.7506 -7.4116 0.5231 34 1 1.5698 -6.8024 1.9814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238688580.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:23 Heat of formation + Delta-G solvation = -128.813468 kcal Electronic energy + Delta-G solvation = -14680.829432 eV Core-core repulsion = 12191.493411 eV Total energy + Delta-G solvation = -2489.336021 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.84839 -36.49322 -34.84227 -32.11121 -30.71412 -29.82189 -28.11095 -24.68371 -22.52392 -21.95083 -20.77604 -19.65923 -17.18815 -15.97030 -15.28199 -14.84472 -14.62796 -14.47503 -14.02808 -13.87086 -13.12077 -13.06276 -12.42359 -12.15749 -12.09070 -11.59801 -11.10917 -11.03614 -10.94476 -10.87973 -10.75018 -10.48483 -10.27319 -10.16419 -9.99436 -8.95729 -8.79257 -8.58732 -8.12379 -6.02296 -4.21781 3.26407 3.34150 3.37453 4.19230 4.44394 4.78491 4.82251 5.03943 5.25153 5.29928 5.36468 5.48006 5.55712 5.59665 5.66083 5.83594 6.01254 6.05367 6.08947 6.15724 6.17616 6.24896 6.31128 6.44768 6.48781 6.58534 6.76317 7.71409 7.78872 8.00132 8.17912 8.82376 9.42431 9.58190 11.02402 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.064555 B = 0.005897 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.636864 B = 4746.685737 C = 4806.277036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.574 4.574 8 H 0.057 0.943 9 C 0.234 3.766 10 H 0.062 0.938 11 O -0.558 6.558 12 C 0.039 3.961 13 O -0.376 6.376 14 C 0.087 3.913 15 C -0.140 4.140 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.116 4.116 20 H 0.261 0.739 21 H 0.343 0.657 22 H 0.040 0.960 23 H 0.034 0.966 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.521 -14.082 -0.600 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.127 4.127 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.612 4.612 8 H 0.075 0.925 9 C 0.176 3.824 10 H 0.080 0.920 11 O -0.360 6.360 12 C -0.038 4.038 13 O -0.295 6.295 14 C 0.028 3.972 15 C -0.178 4.178 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.154 4.154 20 H 0.071 0.929 21 H 0.186 0.814 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.666 -14.025 -0.116 15.127 hybrid contribution 1.325 1.051 -0.400 1.737 sum 6.990 -12.975 -0.516 14.747 Atomic orbital electron populations 1.70106 1.05976 1.26450 1.46633 1.25029 0.94723 0.99193 0.93730 0.86556 0.80117 0.83577 0.77764 1.19686 1.20783 1.20771 1.21554 0.93178 0.91120 1.55347 0.92470 1.19404 0.88223 0.88006 0.86747 0.92038 1.86595 1.38037 1.96270 1.15094 1.23683 0.96889 0.84788 0.98405 1.88029 1.33730 1.13495 1.94254 1.21983 0.93706 0.87113 0.94360 1.22029 1.00423 0.97307 0.98071 1.21500 0.98746 0.95384 0.99795 1.21564 1.00852 0.97732 0.95674 1.21503 0.99882 0.97231 0.96737 1.21576 0.99396 0.94066 1.00353 0.92909 0.81429 0.94140 0.94739 0.93149 0.91916 0.91239 0.92202 0.92058 0.91875 0.92273 0.91803 0.92095 0.91246 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.80 12.84 55.43 0.71 -25.08 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.57 -16.08 8.76 -34.44 -0.30 -16.38 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.23 6.27 3.10 -27.88 -0.09 6.19 16 10 H 0.06 1.83 8.14 -51.93 -0.42 1.40 16 11 O -0.56 -15.28 12.70 -40.07 -0.51 -15.79 16 12 C 0.04 0.86 5.32 37.16 0.20 1.06 16 13 O -0.38 -7.90 9.95 -40.07 -0.40 -8.30 16 14 C 0.09 1.40 2.61 -26.73 -0.07 1.33 16 15 C -0.14 -2.00 5.54 -26.73 -0.15 -2.15 16 16 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 17 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 18 C -0.12 -1.25 5.92 -26.73 -0.16 -1.40 16 19 C -0.12 -1.60 5.57 -26.73 -0.15 -1.75 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.34 8.24 9.04 45.56 0.41 8.66 16 22 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 23 H 0.03 0.72 7.87 -51.93 -0.41 0.31 16 24 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 25 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 278.55 15.07 4.20 4.20 Total: -1.00 -31.13 278.55 -7.15 -38.27 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.00 Total: 4.28 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -1.13 Total: -13.79 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.71 Total: -25.08 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.91 Total: -24.09 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.13 -7.15 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238688580.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.540 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds