Wall clock time and date at job start Mon Mar 30 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00263 * 2 1 4 4 H 1.48497 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46857 * 299.99970 * 3 2 1 6 6 H 1.48501 * 109.47391 * 59.99363 * 3 2 1 7 7 C 1.37877 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00552 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99746 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.47180 * 300.00120 * 9 7 2 11 11 O 1.42896 * 109.47381 * 59.99643 * 9 7 2 12 12 C 1.52998 * 109.47542 * 180.02562 * 9 7 2 13 13 O 1.42894 * 109.47488 * 175.00134 * 12 9 7 14 14 C 1.42900 * 114.00094 * 179.97438 * 13 12 9 15 15 C 1.52999 * 109.47616 * 270.00173 * 14 13 12 16 16 C 1.52997 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 20 20 H 0.97001 * 119.99685 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00152 * 60.00122 * 11 9 7 22 22 H 1.08998 * 109.47138 * 54.99184 * 12 9 7 23 23 H 1.09005 * 109.46876 * 295.00203 * 12 9 7 24 24 H 1.09002 * 109.47002 * 29.99905 * 14 13 12 25 25 H 1.08996 * 109.46929 * 59.99102 * 15 14 13 26 26 H 1.09002 * 109.46716 * 299.99907 * 15 14 13 27 27 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 28 28 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 29 29 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 30 30 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 31 31 H 1.08993 * 109.47662 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.47075 * 300.00932 * 18 17 16 33 33 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 34 34 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 0.4299 -2.5751 -1.1664 12 6 2.2452 -3.6621 0.0018 13 8 1.5345 -4.8962 0.1192 14 6 2.3747 -6.0521 0.1296 15 6 2.5796 -6.5467 -1.3036 16 6 3.4797 -7.7838 -1.2925 17 6 2.8205 -8.8866 -0.4618 18 6 2.6156 -8.3921 0.9715 19 6 1.7155 -7.1550 0.9604 20 1 -0.4850 0.8401 -0.0004 21 1 0.9222 -2.5300 -1.9975 22 1 2.9287 -3.5548 0.8440 23 1 2.8121 -3.6565 -0.9292 24 1 3.3396 -5.7959 0.5670 25 1 3.0496 -5.7611 -1.8953 26 1 1.6147 -6.8029 -1.7410 27 1 4.4447 -7.5272 -0.8552 28 1 3.6253 -8.1364 -2.3136 29 1 1.8556 -9.1433 -0.8990 30 1 3.4620 -9.7679 -0.4535 31 1 2.1463 -9.1779 1.5635 32 1 3.5805 -8.1354 1.4087 33 1 0.7506 -7.4116 0.5231 34 1 1.5698 -6.8024 1.9814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238688580.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:22 Heat of formation + Delta-G solvation = -150.301568 kcal Electronic energy + Delta-G solvation = -14681.761226 eV Core-core repulsion = 12191.493411 eV Total energy + Delta-G solvation = -2490.267815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.12994 -38.14166 -36.60723 -34.30002 -31.72108 -31.25160 -29.84033 -26.68216 -23.58491 -23.07737 -22.71555 -20.70996 -19.24487 -17.41385 -16.86886 -16.73830 -16.55055 -15.82965 -15.24219 -15.15605 -14.70051 -14.51965 -13.80076 -13.76188 -13.19302 -13.05831 -13.02991 -12.81935 -12.71926 -12.07274 -12.03841 -11.92083 -11.48777 -11.39442 -11.21004 -11.04163 -10.76562 -10.26210 -10.20928 -8.18225 -6.46470 1.41034 1.41095 1.54627 2.34937 2.87509 3.08399 3.78495 3.82946 4.08045 4.17595 4.22233 4.29339 4.37421 4.40806 4.53350 4.57150 4.60023 4.69763 4.82669 4.97240 5.10093 5.12434 5.22578 5.25851 5.30804 5.40411 5.51949 5.55186 5.65796 5.97030 6.45071 6.68126 7.28374 7.49639 8.87979 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.064555 B = 0.005897 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.636864 B = 4746.685737 C = 4806.277036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.588 4.588 8 H 0.067 0.933 9 C 0.229 3.771 10 H 0.019 0.981 11 O -0.577 6.577 12 C 0.058 3.942 13 O -0.403 6.403 14 C 0.076 3.924 15 C -0.138 4.138 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.110 4.110 19 C -0.116 4.116 20 H 0.264 0.736 21 H 0.356 0.644 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.462 -14.889 -0.830 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.626 4.626 8 H 0.085 0.915 9 C 0.172 3.828 10 H 0.037 0.963 11 O -0.381 6.381 12 C -0.019 4.019 13 O -0.323 6.323 14 C 0.019 3.981 15 C -0.176 4.176 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.148 4.148 19 C -0.153 4.153 20 H 0.073 0.927 21 H 0.200 0.800 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.625 -14.857 -0.349 16.703 hybrid contribution 0.676 1.230 -0.325 1.440 sum 8.301 -13.627 -0.674 15.970 Atomic orbital electron populations 1.70254 1.07976 1.27658 1.47889 1.26004 0.95555 1.03347 0.93003 0.85343 0.79058 0.78288 0.77854 1.18351 1.20240 1.20300 1.21909 0.93709 0.91898 1.55056 0.91527 1.19284 0.88202 0.90200 0.85130 0.96290 1.86524 1.39101 1.96469 1.15961 1.23224 0.95279 0.84117 0.99269 1.87980 1.35432 1.14359 1.94548 1.22345 0.93565 0.85933 0.96250 1.21998 1.00627 0.98624 0.96334 1.21497 0.98243 0.94066 1.01137 1.21582 1.01236 0.98113 0.94756 1.21500 0.99565 0.95939 0.97758 1.21611 0.99680 0.94766 0.99274 0.92736 0.79967 0.93492 0.93441 0.92501 0.92872 0.92335 0.91437 0.90592 0.92065 0.89832 0.90031 0.91298 0.92176 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.29 12.84 21.45 0.28 -55.01 16 2 C 0.02 1.33 5.40 84.65 0.46 1.79 16 3 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.59 -33.09 8.76 25.60 0.22 -32.86 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.23 12.63 3.10 29.85 0.09 12.72 16 10 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 11 O -0.58 -32.42 12.70 -144.36 -1.83 -34.25 16 12 C 0.06 2.57 5.32 71.98 0.38 2.95 16 13 O -0.40 -17.20 9.95 -144.36 -1.44 -18.64 16 14 C 0.08 2.42 2.61 30.60 0.08 2.50 16 15 C -0.14 -3.79 5.54 30.59 0.17 -3.62 16 16 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16 17 C -0.12 -2.06 5.92 30.60 0.18 -1.88 16 18 C -0.11 -2.08 5.92 30.59 0.18 -1.90 16 19 C -0.12 -3.10 5.57 30.60 0.17 -2.93 16 20 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 21 H 0.36 17.42 9.04 -74.06 -0.67 16.75 16 22 H 0.05 1.99 8.09 -2.39 -0.02 1.98 16 23 H 0.05 1.96 7.87 -2.38 -0.02 1.95 16 24 H 0.06 1.71 7.79 -2.39 -0.02 1.69 16 25 H 0.05 1.53 7.87 -2.39 -0.02 1.51 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -67.27 278.55 1.54 -65.73 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.39 Total: 21.95 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 2.12 Total: -25.25 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.28 Total: -55.01 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -3.27 Total: -52.88 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.27 1.54 -65.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238688580.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.573 kcal (2) G-P(sol) polarization free energy of solvation -67.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds