Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 11 11 O 1.42889 * 109.47632 * 299.99443 * 9 7 2 12 12 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 13 13 O 1.42893 * 109.47371 * 185.00170 * 12 9 7 14 14 C 1.42902 * 114.00333 * 180.02562 * 13 12 9 15 15 C 1.52997 * 109.47120 * 269.99968 * 14 13 12 16 16 C 1.52996 * 109.47077 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.46898 * 60.00302 * 16 15 14 18 18 C 1.52997 * 109.47010 * 299.99739 * 17 16 15 19 19 C 1.52994 * 109.47071 * 149.99903 * 14 13 12 20 20 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 21 21 H 0.96703 * 114.00419 * 300.00505 * 11 9 7 22 22 H 1.09003 * 109.46856 * 305.00465 * 12 9 7 23 23 H 1.09001 * 109.46987 * 64.99820 * 12 9 7 24 24 H 1.09002 * 109.46682 * 29.99988 * 14 13 12 25 25 H 1.09000 * 109.47267 * 300.00144 * 15 14 13 26 26 H 1.09006 * 109.47376 * 59.99984 * 15 14 13 27 27 H 1.08995 * 109.47707 * 299.99983 * 16 15 14 28 28 H 1.09004 * 109.47481 * 179.97438 * 16 15 14 29 29 H 1.09007 * 109.46869 * 179.97438 * 17 16 15 30 30 H 1.09002 * 109.47269 * 60.00051 * 17 16 15 31 31 H 1.09000 * 109.47267 * 299.99718 * 18 17 16 32 32 H 1.08997 * 109.46882 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47234 * 299.99683 * 19 14 13 34 34 H 1.08997 * 109.47625 * 60.00138 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8753 -0.6803 0.8889 11 8 3.9875 -0.5202 -1.1679 12 6 4.0217 -2.6364 -0.0010 13 8 5.4458 -2.6381 0.1159 14 6 6.0268 -3.9437 0.1252 15 6 6.1161 -4.4518 1.5656 16 6 6.7375 -5.8499 1.5755 17 6 8.1406 -5.7886 0.9684 18 6 8.0513 -5.2804 -0.4720 19 6 7.4298 -3.8818 -0.4817 20 1 -0.4849 0.8401 -0.0004 21 1 3.7019 -0.9235 -1.9991 22 1 3.5873 -3.1753 0.8411 23 1 3.7329 -3.1240 -0.9322 24 1 5.4066 -4.6214 -0.4614 25 1 6.7362 -3.7740 2.1522 26 1 5.1165 -4.4959 1.9981 27 1 6.1172 -6.5275 0.9890 28 1 6.8016 -6.2118 2.6017 29 1 8.5835 -6.7846 0.9759 30 1 8.7611 -5.1110 1.5550 31 1 7.4309 -5.9580 -1.0585 32 1 9.0508 -5.2372 -0.9046 33 1 7.3662 -3.5199 -1.5079 34 1 8.0500 -3.2041 0.1049 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238711219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -123.675576 kcal Electronic energy + Delta-G solvation = -14729.534486 eV Core-core repulsion = 12240.421260 eV Total energy + Delta-G solvation = -2489.113225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.94127 -36.73335 -35.14098 -32.25925 -30.77278 -29.96205 -28.43016 -24.82338 -22.56819 -22.00518 -20.72128 -19.69744 -17.50552 -16.13004 -15.32697 -15.06125 -14.69936 -14.59505 -14.08471 -14.04079 -13.19363 -12.98353 -12.73575 -12.35208 -12.18142 -11.70157 -11.60221 -11.11548 -11.02277 -10.84089 -10.62554 -10.50485 -10.32231 -10.12945 -9.83023 -9.03198 -8.90762 -8.63978 -8.26915 -6.14957 -4.27508 3.41215 3.50057 3.78504 4.13582 4.54583 4.72941 4.76760 4.97185 5.19703 5.24094 5.29033 5.41202 5.49980 5.53123 5.61056 5.76288 5.88143 5.96641 5.97882 6.02550 6.10914 6.17922 6.20106 6.26037 6.42518 6.45075 6.52663 7.32708 7.50231 7.90139 8.25744 8.79848 9.05864 9.49187 10.95232 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.060785 B = 0.006459 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.526491 B = 4334.019910 C = 4536.753773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.086 3.914 3 Si 0.872 3.128 4 H -0.286 1.286 5 H -0.216 1.216 6 H -0.295 1.295 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.200 3.800 10 H 0.061 0.939 11 O -0.575 6.575 12 C 0.047 3.953 13 O -0.379 6.379 14 C 0.088 3.912 15 C -0.143 4.143 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.115 4.115 20 H 0.266 0.734 21 H 0.354 0.646 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.190 -10.304 0.321 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.119 4.119 3 Si 0.698 3.302 4 H -0.212 1.212 5 H -0.138 1.138 6 H -0.221 1.221 7 C -0.604 4.604 8 H 0.091 0.909 9 C 0.142 3.858 10 H 0.079 0.921 11 O -0.380 6.380 12 C -0.029 4.029 13 O -0.299 6.299 14 C 0.030 3.970 15 C -0.180 4.180 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.153 4.153 20 H 0.075 0.925 21 H 0.200 0.800 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.421 -9.650 0.783 17.370 hybrid contribution -0.372 0.122 -0.229 0.454 sum 14.049 -9.528 0.554 16.984 Atomic orbital electron populations 1.69950 1.06764 1.27610 1.48510 1.24954 0.94634 1.00015 0.92296 0.87003 0.83089 0.81555 0.78565 1.21248 1.13822 1.22141 1.21376 0.89298 0.95033 1.54696 0.90917 1.19780 0.93188 0.86566 0.86266 0.92094 1.86698 1.77899 1.57227 1.16179 1.23404 0.79019 1.01319 0.99153 1.87988 1.21505 1.25970 1.94391 1.21988 0.94270 0.85913 0.94869 1.22053 1.01457 0.96421 0.98113 1.21496 0.96236 0.97001 1.00696 1.21568 0.97158 1.00773 0.96344 1.21513 1.00623 0.96455 0.96788 1.21575 0.95376 0.96866 1.01482 0.92455 0.79996 0.93549 0.94112 0.92912 0.91313 0.91730 0.92094 0.91989 0.92214 0.91917 0.92031 0.91781 0.91429 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 3 Si 0.87 22.23 26.99 -169.99 -4.59 17.64 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 5 H -0.22 -5.46 5.31 56.52 0.30 -5.16 16 6 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 7 C -0.57 -15.98 9.34 -34.44 -0.32 -16.31 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.20 4.90 2.59 -27.88 -0.07 4.83 16 10 H 0.06 1.57 7.57 -51.93 -0.39 1.17 16 11 O -0.57 -13.79 10.11 -40.07 -0.41 -14.20 16 12 C 0.05 0.99 5.32 37.16 0.20 1.19 16 13 O -0.38 -7.44 9.95 -40.07 -0.40 -7.83 16 14 C 0.09 1.34 2.61 -26.74 -0.07 1.27 16 15 C -0.14 -1.93 5.54 -26.73 -0.15 -2.08 16 16 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 17 C -0.12 -1.17 5.92 -26.73 -0.16 -1.32 16 18 C -0.12 -1.18 5.92 -26.71 -0.16 -1.34 16 19 C -0.12 -1.50 5.58 -26.71 -0.15 -1.65 16 20 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 21 H 0.35 7.45 9.04 45.56 0.41 7.86 16 22 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 23 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 24 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.92 7.87 -51.93 -0.41 0.51 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 272.54 15.07 4.11 4.11 Total: -1.00 -31.23 272.54 -6.73 -37.96 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.08 Total: 3.29 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -1.14 Total: -14.41 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.77 Total: -26.55 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.80 Total: -22.03 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.59 Total: 17.64 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.23 -6.73 -37.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238711219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.719 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds