Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 11 11 O 1.42889 * 109.47632 * 299.99443 * 9 7 2 12 12 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 13 13 O 1.42893 * 109.47371 * 185.00170 * 12 9 7 14 14 C 1.42902 * 114.00333 * 180.02562 * 13 12 9 15 15 C 1.52997 * 109.47120 * 269.99968 * 14 13 12 16 16 C 1.52996 * 109.47077 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.46898 * 60.00302 * 16 15 14 18 18 C 1.52997 * 109.47010 * 299.99739 * 17 16 15 19 19 C 1.52994 * 109.47071 * 149.99903 * 14 13 12 20 20 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 21 21 H 0.96703 * 114.00419 * 300.00505 * 11 9 7 22 22 H 1.09003 * 109.46856 * 305.00465 * 12 9 7 23 23 H 1.09001 * 109.46987 * 64.99820 * 12 9 7 24 24 H 1.09002 * 109.46682 * 29.99988 * 14 13 12 25 25 H 1.09000 * 109.47267 * 300.00144 * 15 14 13 26 26 H 1.09006 * 109.47376 * 59.99984 * 15 14 13 27 27 H 1.08995 * 109.47707 * 299.99983 * 16 15 14 28 28 H 1.09004 * 109.47481 * 179.97438 * 16 15 14 29 29 H 1.09007 * 109.46869 * 179.97438 * 17 16 15 30 30 H 1.09002 * 109.47269 * 60.00051 * 17 16 15 31 31 H 1.09000 * 109.47267 * 299.99718 * 18 17 16 32 32 H 1.08997 * 109.46882 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47234 * 299.99683 * 19 14 13 34 34 H 1.08997 * 109.47625 * 60.00138 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8753 -0.6803 0.8889 11 8 3.9875 -0.5202 -1.1679 12 6 4.0217 -2.6364 -0.0010 13 8 5.4458 -2.6381 0.1159 14 6 6.0268 -3.9437 0.1252 15 6 6.1161 -4.4518 1.5656 16 6 6.7375 -5.8499 1.5755 17 6 8.1406 -5.7886 0.9684 18 6 8.0513 -5.2804 -0.4720 19 6 7.4298 -3.8818 -0.4817 20 1 -0.4849 0.8401 -0.0004 21 1 3.7019 -0.9235 -1.9991 22 1 3.5873 -3.1753 0.8411 23 1 3.7329 -3.1240 -0.9322 24 1 5.4066 -4.6214 -0.4614 25 1 6.7362 -3.7740 2.1522 26 1 5.1165 -4.4959 1.9981 27 1 6.1172 -6.5275 0.9890 28 1 6.8016 -6.2118 2.6017 29 1 8.5835 -6.7846 0.9759 30 1 8.7611 -5.1110 1.5550 31 1 7.4309 -5.9580 -1.0585 32 1 9.0508 -5.2372 -0.9046 33 1 7.3662 -3.5199 -1.5079 34 1 8.0500 -3.2041 0.1049 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238711219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -145.320785 kcal Electronic energy + Delta-G solvation = -14730.473092 eV Core-core repulsion = 12240.421260 eV Total energy + Delta-G solvation = -2490.051832 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.15797 -38.31679 -36.70745 -34.47532 -31.73276 -31.36300 -30.02202 -26.76449 -23.54261 -23.05743 -22.60798 -20.70240 -19.55600 -17.47676 -17.01738 -16.78018 -16.55035 -15.96874 -15.25206 -15.17447 -14.86292 -14.47784 -14.02601 -13.86646 -13.55266 -13.14575 -12.97239 -12.91062 -12.62539 -12.05586 -11.96914 -11.83356 -11.47093 -11.34154 -11.23508 -11.10870 -10.85578 -10.32951 -10.18549 -8.40226 -6.56559 1.38742 1.43548 1.74539 2.42002 2.76960 2.97573 3.78191 3.82565 3.97934 4.08014 4.21673 4.25903 4.34417 4.38178 4.47066 4.57170 4.60282 4.70333 4.74235 4.95949 5.08208 5.12815 5.22508 5.24923 5.31229 5.37228 5.41216 5.42097 5.52165 6.02048 6.40922 6.55346 7.14943 7.28572 8.73398 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.060785 B = 0.006459 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.526491 B = 4334.019910 C = 4536.753773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.034 3.966 3 Si 0.937 3.063 4 H -0.284 1.284 5 H -0.211 1.211 6 H -0.291 1.291 7 C -0.569 4.569 8 H 0.043 0.957 9 C 0.204 3.796 10 H 0.051 0.949 11 O -0.579 6.579 12 C 0.062 3.938 13 O -0.397 6.397 14 C 0.078 3.922 15 C -0.142 4.142 16 C -0.113 4.113 17 C -0.119 4.119 18 C -0.111 4.111 19 C -0.113 4.113 20 H 0.270 0.730 21 H 0.368 0.632 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.226 -10.926 0.127 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.166 4.166 3 Si 0.761 3.239 4 H -0.210 1.210 5 H -0.133 1.133 6 H -0.218 1.218 7 C -0.607 4.607 8 H 0.061 0.939 9 C 0.146 3.854 10 H 0.069 0.931 11 O -0.385 6.385 12 C -0.015 4.015 13 O -0.317 6.317 14 C 0.021 3.979 15 C -0.179 4.179 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.149 4.149 19 C -0.151 4.151 20 H 0.079 0.921 21 H 0.216 0.784 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.470 -10.292 0.582 19.430 hybrid contribution -1.006 0.236 -0.178 1.048 sum 15.465 -10.056 0.404 18.451 Atomic orbital electron populations 1.70053 1.08314 1.28657 1.50221 1.25777 0.95288 1.03456 0.92091 0.85994 0.81825 0.77513 0.78558 1.21006 1.13262 1.21763 1.21633 0.91389 0.93830 1.53803 0.93888 1.19554 0.90860 0.88785 0.86198 0.93099 1.86623 1.77667 1.57584 1.16674 1.23009 0.80230 0.98772 0.99499 1.87937 1.20254 1.28923 1.94610 1.22328 0.95274 0.84048 0.96282 1.22036 1.00930 0.98275 0.96708 1.21495 0.96850 0.94889 1.01821 1.21579 0.96367 1.02018 0.95698 1.21513 1.01388 0.94458 0.97526 1.21592 0.93877 0.98848 1.00736 0.92130 0.78421 0.93737 0.93364 0.92590 0.91913 0.93106 0.91649 0.90739 0.90039 0.91896 0.91474 0.89988 0.91933 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.93 13.96 21.45 0.30 -57.63 16 2 C 0.03 2.01 5.47 84.65 0.46 2.48 16 3 Si 0.94 45.95 26.99 68.60 1.85 47.80 16 4 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 5 H -0.21 -10.06 5.31 99.48 0.53 -9.54 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 7 C -0.57 -32.41 9.34 25.60 0.24 -32.17 16 8 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 9 C 0.20 9.93 2.59 29.85 0.08 10.00 16 10 H 0.05 2.59 7.57 -2.38 -0.02 2.57 16 11 O -0.58 -26.93 10.11 -144.36 -1.46 -28.39 16 12 C 0.06 2.55 5.32 71.98 0.38 2.94 16 13 O -0.40 -15.27 9.95 -144.36 -1.44 -16.71 16 14 C 0.08 2.28 2.61 30.59 0.08 2.36 16 15 C -0.14 -3.68 5.54 30.59 0.17 -3.51 16 16 C -0.11 -2.15 5.92 30.59 0.18 -1.97 16 17 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 18 C -0.11 -1.94 5.92 30.61 0.18 -1.76 16 19 C -0.11 -2.73 5.58 30.61 0.17 -2.56 16 20 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 21 H 0.37 14.94 9.04 -74.06 -0.67 14.27 16 22 H 0.04 1.84 7.87 -2.39 -0.02 1.82 16 23 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 24 H 0.06 1.59 7.79 -2.39 -0.02 1.57 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.43 7.87 -2.38 -0.02 1.41 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -65.84 272.54 1.59 -64.25 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.21 Total: 16.61 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 2.13 Total: -25.93 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.30 Total: -57.63 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -2.90 Total: -45.10 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.85 Total: 47.80 kcal Total: -65.84 1.59 -64.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238711219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.070 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds