Wall clock time and date at job start Mon Mar 30 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 6 6 C 1.52999 * 109.62656 * 299.61056 * 5 2 1 7 7 O 1.43752 * 109.63028 * 179.36408 * 5 2 1 8 8 C 1.44782 * 104.81461 * 215.80768 * 7 5 2 9 9 C 1.54916 * 101.72233 * 36.10539 * 8 7 5 10 10 H 1.08999 * 110.84101 * 82.90314 * 9 8 7 11 11 C 1.50698 * 110.69442 * 206.03716 * 9 8 7 12 12 H 1.07993 * 120.00233 * 355.11359 * 11 9 8 13 13 C 1.37882 * 119.99772 * 175.10878 * 11 9 8 14 14 N 1.31515 * 119.99922 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99939 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47134 * 60.00366 * 15 13 11 17 17 H 1.48502 * 109.46998 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47061 * 299.99914 * 15 13 11 19 19 O 1.43371 * 109.63155 * 60.00167 * 5 2 1 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 24 24 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 27 27 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 29 29 H 1.09000 * 109.47289 * 60.00239 * 6 5 2 30 30 H 1.09004 * 109.46569 * 179.97438 * 6 5 2 31 31 H 1.08999 * 109.46904 * 299.99396 * 6 5 2 32 32 H 1.08999 * 110.98156 * 277.99730 * 8 7 5 33 33 H 1.09000 * 111.00963 * 154.22534 * 8 7 5 34 34 H 0.96997 * 120.00040 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2492 6 6 1.5400 -2.1672 -1.2479 7 8 3.4775 -0.7103 -1.2602 8 6 3.8360 -0.5711 -2.6560 9 6 2.7204 0.3702 -3.1751 10 1 2.9621 1.4117 -2.9631 11 6 2.4967 0.1673 -4.6515 12 1 3.1360 -0.5022 -5.2076 13 6 1.4755 0.8364 -5.2923 14 7 0.6971 1.6521 -4.6152 15 14 1.1977 0.5844 -7.1222 16 1 0.9091 -0.8481 -7.3864 17 1 0.0473 1.4117 -7.5668 18 1 2.4159 0.9898 -7.8683 19 8 1.5641 -0.0481 -2.4221 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2493 27 1 3.1300 -0.7217 1.2491 28 1 1.6766 -0.2074 2.1393 29 1 0.4501 -2.1748 -1.2453 30 1 1.9044 -2.6784 -2.1390 31 1 1.9092 -2.6785 -0.3588 32 1 3.8024 -1.5340 -3.1655 33 1 4.8174 -0.1092 -2.7632 34 1 -0.0210 2.1230 -5.0661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258573812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:16 Heat of formation + Delta-G solvation = -106.027930 kcal Electronic energy + Delta-G solvation = -15846.017153 eV Core-core repulsion = 13357.669187 eV Total energy + Delta-G solvation = -2488.347966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.68587 -35.76691 -33.81422 -32.40268 -29.86159 -28.13379 -26.76382 -26.21448 -24.69140 -22.09340 -21.03584 -18.13514 -16.72001 -16.09696 -15.31723 -14.69971 -14.10539 -13.83020 -13.49203 -13.14298 -12.76029 -12.22965 -12.17904 -11.82667 -11.67654 -11.44164 -11.41205 -11.09612 -10.92019 -10.89524 -10.67899 -10.54427 -10.21871 -10.14070 -10.07573 -9.27387 -8.90321 -8.60320 -8.02145 -6.08250 -4.23032 3.28307 3.33173 3.35190 4.35596 4.56832 4.94334 5.30669 5.37129 5.51648 5.61096 5.91985 5.99653 6.05378 6.08873 6.15738 6.19474 6.24297 6.34709 6.37455 6.41768 6.44624 6.50880 6.60985 6.76779 6.85485 6.88178 7.02722 7.07537 7.50549 7.79904 8.15337 8.54969 8.89738 9.48441 10.99037 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.043012 B = 0.010259 C = 0.009618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.831826 B = 2728.590220 C = 2910.373496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.134 4.134 4 C -0.137 4.137 5 C 0.255 3.745 6 C -0.168 4.168 7 O -0.392 6.392 8 C 0.019 3.981 9 C 0.190 3.810 10 H 0.039 0.961 11 C -0.542 4.542 12 H 0.064 0.936 13 C 0.081 3.919 14 N -0.859 5.859 15 Si 0.894 3.106 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 O -0.350 6.350 20 H 0.071 0.929 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -3.331 7.511 8.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.066 4.066 3 C -0.192 4.192 4 C -0.194 4.194 5 C 0.177 3.823 6 C -0.226 4.226 7 O -0.314 6.314 8 C -0.057 4.057 9 C 0.135 3.865 10 H 0.057 0.943 11 C -0.580 4.580 12 H 0.083 0.917 13 C -0.126 4.126 14 N -0.494 5.494 15 Si 0.721 3.279 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 O -0.271 6.271 20 H 0.090 0.910 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.069 -3.179 7.638 8.342 hybrid contribution -0.134 -0.214 -1.108 1.136 sum 0.935 -3.393 6.530 7.419 Atomic orbital electron populations 1.21819 0.94074 1.01373 1.02016 1.20751 0.95877 0.96156 0.93846 1.21736 1.00873 0.94990 1.01559 1.21871 1.01417 0.99686 0.96461 1.23029 0.78934 0.91384 0.88935 1.22413 1.01846 0.96746 1.01583 1.89023 1.21425 1.94636 1.26285 1.24490 1.00528 1.00189 0.80530 1.21215 0.80355 0.93308 0.91664 0.94308 1.20952 1.17130 1.28580 0.91300 0.91744 1.25036 0.95223 0.94062 0.98244 1.70020 1.17383 1.26130 1.35884 0.86646 0.77825 0.78402 0.85029 1.20040 1.21102 1.20031 1.89221 1.31609 1.74406 1.31848 0.90983 0.93090 0.93475 0.93868 0.92797 0.91292 0.92910 0.92302 0.93292 0.91454 0.92407 0.92219 0.92249 0.89755 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.99 37.16 0.30 -2.05 16 2 C -0.07 -1.20 0.47 -154.51 -0.07 -1.28 16 3 C -0.13 -2.50 8.18 37.16 0.30 -2.20 16 4 C -0.14 -2.11 7.98 37.16 0.30 -1.81 16 5 C 0.26 5.37 0.40 -26.73 -0.01 5.36 16 6 C -0.17 -3.16 8.48 37.16 0.32 -2.85 16 7 O -0.39 -8.37 9.67 -59.04 -0.57 -8.94 16 8 C 0.02 0.41 7.33 38.17 0.28 0.69 16 9 C 0.19 4.89 3.51 -26.87 -0.09 4.80 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.54 -14.97 8.83 -34.44 -0.30 -15.27 16 12 H 0.06 1.71 7.78 -52.49 -0.41 1.30 16 13 C 0.08 2.26 5.42 -17.82 -0.10 2.16 16 14 N -0.86 -25.00 12.95 55.43 0.72 -24.29 16 15 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 O -0.35 -8.95 8.79 -59.04 -0.52 -9.47 16 20 H 0.07 1.45 7.69 -51.93 -0.40 1.05 16 21 H 0.05 0.82 6.45 -51.93 -0.34 0.48 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 25 H 0.07 1.48 7.69 -51.93 -0.40 1.08 16 26 H 0.05 0.76 6.43 -51.93 -0.33 0.42 16 27 H 0.06 0.94 7.70 -51.93 -0.40 0.54 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.22 6.45 -51.93 -0.34 0.88 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.98 6.44 -51.93 -0.33 0.64 16 32 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 33 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 270.36 15.07 4.07 4.07 Total: -1.00 -29.24 270.36 -5.84 -35.08 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.43 Total: -0.07 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 0.91 Total: -12.45 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.72 Total: -24.29 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -1.09 Total: -18.40 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.24 -5.84 -35.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258573812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.949 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds