Wall clock time and date at job start Mon Mar 30 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 6 6 C 1.52999 * 109.62656 * 299.61056 * 5 2 1 7 7 O 1.43752 * 109.63028 * 179.36408 * 5 2 1 8 8 C 1.44782 * 104.81461 * 215.80768 * 7 5 2 9 9 C 1.54916 * 101.72233 * 36.10539 * 8 7 5 10 10 H 1.08999 * 110.84101 * 82.90314 * 9 8 7 11 11 C 1.50698 * 110.69442 * 206.03716 * 9 8 7 12 12 H 1.07993 * 120.00233 * 355.11359 * 11 9 8 13 13 C 1.37882 * 119.99772 * 175.10878 * 11 9 8 14 14 N 1.31515 * 119.99922 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99939 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47134 * 60.00366 * 15 13 11 17 17 H 1.48502 * 109.46998 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47061 * 299.99914 * 15 13 11 19 19 O 1.43371 * 109.63155 * 60.00167 * 5 2 1 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 24 24 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 27 27 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 29 29 H 1.09000 * 109.47289 * 60.00239 * 6 5 2 30 30 H 1.09004 * 109.46569 * 179.97438 * 6 5 2 31 31 H 1.08999 * 109.46904 * 299.99396 * 6 5 2 32 32 H 1.08999 * 110.98156 * 277.99730 * 8 7 5 33 33 H 1.09000 * 111.00963 * 154.22534 * 8 7 5 34 34 H 0.96997 * 120.00040 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0401 -0.7213 -1.2492 6 6 1.5400 -2.1672 -1.2479 7 8 3.4775 -0.7103 -1.2602 8 6 3.8360 -0.5711 -2.6560 9 6 2.7204 0.3702 -3.1751 10 1 2.9621 1.4117 -2.9631 11 6 2.4967 0.1673 -4.6515 12 1 3.1360 -0.5022 -5.2076 13 6 1.4755 0.8364 -5.2923 14 7 0.6971 1.6521 -4.6152 15 14 1.1977 0.5844 -7.1222 16 1 0.9091 -0.8481 -7.3864 17 1 0.0473 1.4117 -7.5668 18 1 2.4159 0.9898 -7.8683 19 8 1.5641 -0.0481 -2.4221 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2493 27 1 3.1300 -0.7217 1.2491 28 1 1.6766 -0.2074 2.1393 29 1 0.4501 -2.1748 -1.2453 30 1 1.9044 -2.6784 -2.1390 31 1 1.9092 -2.6785 -0.3588 32 1 3.8024 -1.5340 -3.1655 33 1 4.8174 -0.1092 -2.7632 34 1 -0.0210 2.1230 -5.0661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258573812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:16 Heat of formation + Delta-G solvation = -123.978954 kcal Electronic energy + Delta-G solvation = -15846.795568 eV Core-core repulsion = 13357.669187 eV Total energy + Delta-G solvation = -2489.126381 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.39249 -37.31766 -35.67888 -34.44019 -31.56259 -29.91812 -28.09195 -27.68327 -26.65855 -23.68293 -22.97521 -19.69095 -18.80573 -17.82206 -16.99291 -16.65507 -15.73977 -15.54266 -15.02068 -14.72585 -14.46652 -13.98524 -13.82609 -13.52629 -13.21267 -13.00218 -12.84503 -12.77465 -12.67244 -12.45598 -12.43308 -12.24290 -11.96404 -11.65985 -11.59937 -11.12919 -10.79788 -10.57970 -9.86979 -8.19070 -6.41765 1.40507 1.43039 1.50718 2.37951 2.84533 3.09154 3.53410 3.89920 3.97559 4.16088 4.28933 4.34525 4.49168 4.54692 4.63373 4.73667 4.80099 4.83992 4.89464 4.98354 5.02073 5.08066 5.11689 5.21760 5.24645 5.33834 5.49879 5.56989 5.64445 5.67182 6.09133 6.58111 6.92396 7.34504 8.88605 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.043012 B = 0.010259 C = 0.009618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.831826 B = 2728.590220 C = 2910.373496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 C -0.128 4.128 4 C -0.129 4.129 5 C 0.240 3.760 6 C -0.164 4.164 7 O -0.390 6.390 8 C 0.029 3.971 9 C 0.185 3.815 10 H 0.004 0.996 11 C -0.563 4.563 12 H 0.071 0.929 13 C 0.027 3.973 14 N -0.896 5.896 15 Si 0.964 3.036 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.263 1.263 19 O -0.378 6.378 20 H 0.032 0.968 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 -4.579 8.341 9.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.070 4.070 3 C -0.185 4.185 4 C -0.186 4.186 5 C 0.162 3.838 6 C -0.221 4.221 7 O -0.312 6.312 8 C -0.047 4.047 9 C 0.129 3.871 10 H 0.022 0.978 11 C -0.600 4.600 12 H 0.089 0.911 13 C -0.176 4.176 14 N -0.533 5.533 15 Si 0.788 3.212 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.188 1.188 19 O -0.299 6.299 20 H 0.051 0.949 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.209 -4.438 8.476 9.644 hybrid contribution -0.162 0.190 -1.297 1.321 sum 1.047 -4.248 7.179 8.407 Atomic orbital electron populations 1.21763 0.93379 1.02124 1.01416 1.20850 0.96451 0.95682 0.94047 1.21663 1.00360 0.95608 1.00885 1.21808 1.01008 1.00365 0.95435 1.23526 0.78762 0.92735 0.88736 1.22392 1.02143 0.95189 1.02417 1.89007 1.21783 1.94683 1.25685 1.24371 1.00135 0.99537 0.80688 1.21035 0.82041 0.92496 0.91511 0.97788 1.21359 1.17340 1.28622 0.92644 0.91137 1.25926 0.94917 0.93653 1.03067 1.70171 1.18033 1.27247 1.37829 0.85545 0.78041 0.78416 0.79216 1.19442 1.20839 1.18766 1.89151 1.32028 1.75081 1.33668 0.94881 0.91661 0.90717 0.90974 0.93439 0.95412 0.91449 0.92877 0.90804 0.90998 0.93667 0.89259 0.91734 0.87678 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 7.99 71.98 0.58 -3.74 16 2 C -0.07 -2.45 0.47 -52.18 -0.02 -2.48 16 3 C -0.13 -4.74 8.18 71.98 0.59 -4.15 16 4 C -0.13 -3.52 7.98 71.98 0.57 -2.95 16 5 C 0.24 9.95 0.40 30.59 0.01 9.96 16 6 C -0.16 -5.89 8.48 71.98 0.61 -5.28 16 7 O -0.39 -16.30 9.67 -126.22 -1.22 -17.52 16 8 C 0.03 1.26 7.33 72.64 0.53 1.79 16 9 C 0.18 9.80 3.51 30.50 0.11 9.91 16 10 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 11 C -0.56 -31.56 8.83 25.60 0.23 -31.34 16 12 H 0.07 3.75 7.78 -2.91 -0.02 3.73 16 13 C 0.03 1.55 5.42 84.66 0.46 2.01 16 14 N -0.90 -53.82 12.95 21.45 0.28 -53.55 16 15 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 O -0.38 -19.82 8.79 -126.22 -1.11 -20.93 16 20 H 0.03 1.34 7.69 -2.39 -0.02 1.32 16 21 H 0.06 1.95 6.45 -2.39 -0.02 1.93 16 22 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.05 1.77 7.67 -2.39 -0.02 1.75 16 25 H 0.03 1.22 7.69 -2.39 -0.02 1.21 16 26 H 0.07 1.65 6.43 -2.39 -0.02 1.63 16 27 H 0.05 1.52 7.70 -2.39 -0.02 1.50 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 2.48 6.45 -2.39 -0.02 2.47 16 30 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.09 2.64 6.44 -2.39 -0.02 2.62 16 32 H 0.06 2.73 8.04 -2.39 -0.02 2.71 16 33 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -64.10 270.36 4.69 -59.41 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.06 Total: 13.27 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.66 Total: -26.26 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.28 Total: -53.55 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -2.33 Total: -38.46 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -64.10 4.69 -59.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258573812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.571 kcal (2) G-P(sol) polarization free energy of solvation -64.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds