Wall clock time and date at job start Mon Mar 30 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47118 * 2 1 4 4 C 1.53003 * 109.46712 * 239.99931 * 2 1 3 5 5 C 1.52999 * 109.46933 * 120.00250 * 2 1 3 6 6 C 1.53002 * 109.62710 * 180.39463 * 5 2 1 7 7 O 1.43368 * 109.50967 * 300.70384 * 5 2 1 8 8 C 1.44198 * 107.28920 * 120.47611 * 7 5 2 9 9 C 1.54911 * 103.07198 * 21.44044 * 8 7 5 10 10 H 1.08996 * 111.01216 * 82.55999 * 9 8 7 11 11 C 1.50702 * 110.97489 * 206.32712 * 9 8 7 12 12 H 1.08002 * 120.00299 * 353.79459 * 11 9 8 13 13 C 1.37884 * 119.99942 * 173.51018 * 11 9 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 9 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 O 1.43745 * 109.63649 * 59.99628 * 5 2 1 20 20 H 1.08999 * 109.46804 * 300.00001 * 1 2 3 21 21 H 1.09004 * 109.47373 * 59.99872 * 1 2 3 22 22 H 1.09001 * 109.47384 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47048 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47152 * 299.99738 * 3 2 1 25 25 H 1.08995 * 109.47436 * 59.99818 * 3 2 1 26 26 H 1.09003 * 109.47046 * 299.99711 * 4 2 1 27 27 H 1.08994 * 109.46980 * 60.00091 * 4 2 1 28 28 H 1.08996 * 109.46529 * 180.02562 * 4 2 1 29 29 H 1.09003 * 109.46839 * 300.30361 * 6 5 2 30 30 H 1.08996 * 109.47069 * 60.29870 * 6 5 2 31 31 H 1.08998 * 109.47052 * 180.31027 * 6 5 2 32 32 H 1.09002 * 110.69731 * 263.04341 * 8 7 5 33 33 H 1.09001 * 110.69225 * 139.83583 * 8 7 5 34 34 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 3.5700 -0.7148 1.2578 7 8 1.5490 -0.0558 2.4203 8 6 0.7720 -1.0157 3.1647 9 6 1.3039 -2.3750 2.6458 10 1 2.2216 -2.6581 3.1613 11 6 0.2578 -3.4512 2.7822 12 1 -0.6719 -3.2395 3.2894 13 6 0.4853 -4.7045 2.2544 14 7 1.6174 -4.9623 1.6368 15 14 -0.8145 -6.0362 2.4167 16 1 -2.0662 -5.5897 1.7540 17 1 -0.3295 -7.2826 1.7711 18 1 -1.0809 -6.2954 3.8545 19 8 1.5627 -2.0772 1.2528 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6766 -1.7490 -1.2492 27 1 1.6766 -0.2075 -2.1392 28 1 3.1299 -0.7217 -1.2490 29 1 3.9404 -1.2203 0.3660 30 1 3.9289 0.3143 1.2676 31 1 3.9305 -1.2340 2.1458 32 1 -0.2896 -0.9073 2.9426 33 1 0.9553 -0.9132 4.2343 34 1 1.7776 -5.8442 1.2658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258573815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:18 Heat of formation + Delta-G solvation = -106.674742 kcal Electronic energy + Delta-G solvation = -15846.327789 eV Core-core repulsion = 13357.951775 eV Total energy + Delta-G solvation = -2488.376014 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.68880 -35.77039 -33.80792 -32.45395 -29.90750 -28.09748 -26.77573 -26.23925 -24.68723 -22.13102 -21.07540 -18.09689 -16.82362 -15.86098 -15.20290 -14.75837 -14.42708 -13.86630 -13.50402 -13.03345 -12.78099 -12.28253 -12.23065 -11.84288 -11.60748 -11.49494 -11.38573 -11.09789 -10.93921 -10.90984 -10.71415 -10.59525 -10.21817 -10.13181 -10.02786 -9.25286 -8.82186 -8.62673 -8.17083 -6.11326 -4.25718 3.27479 3.32274 3.34399 4.33590 4.57906 4.92149 5.27510 5.34139 5.50350 5.66559 5.92512 5.99650 6.03701 6.10688 6.17126 6.20359 6.24250 6.33278 6.38751 6.40621 6.44267 6.48955 6.58169 6.73894 6.86503 6.88720 7.02452 7.08323 7.43632 7.77778 8.11792 8.50570 8.83914 9.45416 10.96371 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040935 B = 0.010256 C = 0.009926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.841524 B = 2729.462408 C = 2820.109660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 C -0.136 4.136 4 C -0.136 4.136 5 C 0.253 3.747 6 C -0.167 4.167 7 O -0.398 6.398 8 C 0.023 3.977 9 C 0.186 3.814 10 H 0.036 0.964 11 C -0.536 4.536 12 H 0.067 0.933 13 C 0.080 3.920 14 N -0.860 5.860 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 O -0.344 6.344 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 7.958 -2.498 8.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.066 4.066 3 C -0.193 4.193 4 C -0.193 4.193 5 C 0.175 3.825 6 C -0.224 4.224 7 O -0.320 6.320 8 C -0.053 4.053 9 C 0.131 3.869 10 H 0.053 0.947 11 C -0.573 4.573 12 H 0.085 0.915 13 C -0.127 4.127 14 N -0.495 5.495 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 O -0.264 6.264 20 H 0.072 0.928 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.877 7.887 -2.733 8.393 hybrid contribution -0.600 -0.821 0.163 1.030 sum 0.276 7.066 -2.570 7.524 Atomic orbital electron populations 1.21729 0.94266 1.02707 1.00367 1.20741 0.96491 0.94792 0.94624 1.21846 1.00589 0.95575 1.01303 1.21831 1.00502 1.01429 0.95587 1.23026 0.91405 0.82753 0.85329 1.22399 0.96109 1.01227 1.02701 1.88675 1.69445 1.37387 1.36452 1.24305 0.95569 0.89938 0.95507 1.21370 0.95761 0.90870 0.78894 0.94658 1.20814 1.03167 0.94335 1.39023 0.91486 1.25053 0.95358 0.98451 0.93824 1.70026 1.23253 1.21841 1.34371 0.86613 0.81886 0.80782 0.78451 1.19954 1.21092 1.19987 1.89571 1.84695 1.23186 1.28936 0.92845 0.93857 0.91425 0.92857 0.93282 0.92235 0.91253 0.93497 0.92933 0.91262 0.92361 0.92431 0.92049 0.90724 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.18 37.16 0.30 -2.13 16 2 C -0.07 -1.20 0.47 -154.51 -0.07 -1.27 16 3 C -0.14 -2.08 7.97 37.16 0.30 -1.79 16 4 C -0.14 -2.34 7.99 37.16 0.30 -2.04 16 5 C 0.25 5.34 0.40 -26.73 -0.01 5.33 16 6 C -0.17 -3.19 8.49 37.16 0.32 -2.88 16 7 O -0.40 -8.53 9.52 -59.04 -0.56 -9.09 16 8 C 0.02 0.51 7.51 38.17 0.29 0.80 16 9 C 0.19 4.81 3.31 -26.87 -0.09 4.72 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.54 -14.76 8.85 -34.44 -0.30 -15.07 16 12 H 0.07 1.77 7.79 -52.49 -0.41 1.36 16 13 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 14 N -0.86 -25.01 12.95 55.43 0.72 -24.29 16 15 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 O -0.34 -8.78 8.96 -59.04 -0.53 -9.31 16 20 H 0.05 0.98 7.66 -51.93 -0.40 0.58 16 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 1.40 7.69 -51.93 -0.40 1.00 16 23 H 0.05 0.77 6.44 -51.93 -0.33 0.43 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.94 7.70 -51.93 -0.40 0.54 16 26 H 0.07 1.37 7.69 -51.93 -0.40 0.97 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.84 6.44 -51.93 -0.33 0.51 16 29 H 0.07 1.28 6.44 -51.93 -0.33 0.95 16 30 H 0.06 0.97 6.45 -51.93 -0.34 0.63 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 270.39 15.07 4.07 4.07 Total: -1.00 -29.17 270.39 -5.82 -34.99 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.43 Total: -0.16 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 0.93 Total: -12.19 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.72 Total: -24.29 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -1.09 Total: -18.40 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.17 -5.82 -34.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258573815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.682 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds