Wall clock time and date at job start Mon Mar 30 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47118 * 2 1 4 4 C 1.53003 * 109.46712 * 239.99931 * 2 1 3 5 5 C 1.52999 * 109.46933 * 120.00250 * 2 1 3 6 6 C 1.53002 * 109.62710 * 180.39463 * 5 2 1 7 7 O 1.43368 * 109.50967 * 300.70384 * 5 2 1 8 8 C 1.44198 * 107.28920 * 120.47611 * 7 5 2 9 9 C 1.54911 * 103.07198 * 21.44044 * 8 7 5 10 10 H 1.08996 * 111.01216 * 82.55999 * 9 8 7 11 11 C 1.50702 * 110.97489 * 206.32712 * 9 8 7 12 12 H 1.08002 * 120.00299 * 353.79459 * 11 9 8 13 13 C 1.37884 * 119.99942 * 173.51018 * 11 9 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 9 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 O 1.43745 * 109.63649 * 59.99628 * 5 2 1 20 20 H 1.08999 * 109.46804 * 300.00001 * 1 2 3 21 21 H 1.09004 * 109.47373 * 59.99872 * 1 2 3 22 22 H 1.09001 * 109.47384 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47048 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47152 * 299.99738 * 3 2 1 25 25 H 1.08995 * 109.47436 * 59.99818 * 3 2 1 26 26 H 1.09003 * 109.47046 * 299.99711 * 4 2 1 27 27 H 1.08994 * 109.46980 * 60.00091 * 4 2 1 28 28 H 1.08996 * 109.46529 * 180.02562 * 4 2 1 29 29 H 1.09003 * 109.46839 * 300.30361 * 6 5 2 30 30 H 1.08996 * 109.47069 * 60.29870 * 6 5 2 31 31 H 1.08998 * 109.47052 * 180.31027 * 6 5 2 32 32 H 1.09002 * 110.69731 * 263.04341 * 8 7 5 33 33 H 1.09001 * 110.69225 * 139.83583 * 8 7 5 34 34 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 3.5700 -0.7148 1.2578 7 8 1.5490 -0.0558 2.4203 8 6 0.7720 -1.0157 3.1647 9 6 1.3039 -2.3750 2.6458 10 1 2.2216 -2.6581 3.1613 11 6 0.2578 -3.4512 2.7822 12 1 -0.6719 -3.2395 3.2894 13 6 0.4853 -4.7045 2.2544 14 7 1.6174 -4.9623 1.6368 15 14 -0.8145 -6.0362 2.4167 16 1 -2.0662 -5.5897 1.7540 17 1 -0.3295 -7.2826 1.7711 18 1 -1.0809 -6.2954 3.8545 19 8 1.5627 -2.0772 1.2528 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6766 -1.7490 -1.2492 27 1 1.6766 -0.2075 -2.1392 28 1 3.1299 -0.7217 -1.2490 29 1 3.9404 -1.2203 0.3660 30 1 3.9289 0.3143 1.2676 31 1 3.9305 -1.2340 2.1458 32 1 -0.2896 -0.9073 2.9426 33 1 0.9553 -0.9132 4.2343 34 1 1.7776 -5.8442 1.2658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258573815.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:17 Heat of formation + Delta-G solvation = -124.495406 kcal Electronic energy + Delta-G solvation = -15847.100551 eV Core-core repulsion = 13357.951775 eV Total energy + Delta-G solvation = -2489.148776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40347 -37.31704 -35.67014 -34.48995 -31.61728 -29.90371 -28.08710 -27.67999 -26.66262 -23.71901 -23.02182 -19.67531 -18.82158 -17.68133 -16.97908 -16.51816 -16.20993 -15.47166 -15.00422 -14.71283 -14.42797 -14.10332 -13.88988 -13.41160 -13.20656 -13.02215 -12.87441 -12.78202 -12.67101 -12.52310 -12.37028 -12.24564 -11.98300 -11.62109 -11.58810 -11.13204 -10.81515 -10.52242 -9.99155 -8.22090 -6.43928 1.40365 1.43084 1.50722 2.36859 2.82917 3.07678 3.50781 3.89282 3.99567 4.17388 4.26191 4.39210 4.48022 4.55944 4.58086 4.72910 4.80059 4.83569 4.90944 4.98689 5.01397 5.07076 5.11169 5.21814 5.24626 5.35595 5.46478 5.57961 5.63036 5.64694 6.06089 6.56198 6.83834 7.31715 8.86318 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040935 B = 0.010256 C = 0.009926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.841524 B = 2729.462408 C = 2820.109660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.129 4.129 4 C -0.131 4.131 5 C 0.239 3.761 6 C -0.163 4.163 7 O -0.396 6.396 8 C 0.034 3.966 9 C 0.179 3.821 10 H 0.005 0.995 11 C -0.556 4.556 12 H 0.072 0.928 13 C 0.027 3.973 14 N -0.897 5.897 15 Si 0.965 3.035 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.262 1.262 19 O -0.370 6.370 20 H 0.048 0.952 21 H 0.073 0.927 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 9.211 -3.068 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.069 4.069 3 C -0.186 4.186 4 C -0.188 4.188 5 C 0.161 3.839 6 C -0.221 4.221 7 O -0.318 6.318 8 C -0.042 4.042 9 C 0.124 3.876 10 H 0.022 0.978 11 C -0.593 4.593 12 H 0.090 0.910 13 C -0.176 4.176 14 N -0.534 5.534 15 Si 0.789 3.211 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.187 1.187 19 O -0.291 6.291 20 H 0.067 0.933 21 H 0.091 0.909 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.349 9.158 -3.293 9.738 hybrid contribution -0.396 -1.158 0.331 1.267 sum -0.047 8.000 -2.963 8.532 Atomic orbital electron populations 1.21674 0.94534 1.00744 1.01604 1.20838 0.96378 0.96480 0.93251 1.21793 1.01295 0.93121 1.02365 1.21786 1.01100 0.99512 0.96441 1.23506 0.92527 0.81250 0.86586 1.22381 0.94843 1.02881 1.01953 1.88650 1.69461 1.36992 1.36653 1.24168 0.95517 0.87916 0.96597 1.21225 0.94322 0.92644 0.79415 0.97777 1.21210 1.03645 0.95379 1.39105 0.90953 1.25936 0.97454 1.00862 0.93344 1.70163 1.25283 1.22395 1.35535 0.85519 0.78959 0.77621 0.78989 1.19437 1.20769 1.18670 1.89510 1.85255 1.25943 1.28408 0.93329 0.90853 0.94916 0.91714 0.90629 0.92795 0.94852 0.90528 0.91954 0.90930 0.89374 0.94346 0.91888 0.88662 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 8.18 71.98 0.59 -3.92 16 2 C -0.07 -2.38 0.47 -52.18 -0.02 -2.41 16 3 C -0.13 -3.48 7.97 71.98 0.57 -2.91 16 4 C -0.13 -4.29 7.99 71.98 0.58 -3.72 16 5 C 0.24 9.98 0.40 30.59 0.01 9.99 16 6 C -0.16 -6.13 8.49 71.98 0.61 -5.51 16 7 O -0.40 -16.65 9.52 -126.22 -1.20 -17.85 16 8 C 0.03 1.51 7.51 72.64 0.55 2.06 16 9 C 0.18 9.53 3.31 30.50 0.10 9.63 16 10 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 11 C -0.56 -31.18 8.85 25.60 0.23 -30.96 16 12 H 0.07 3.85 7.79 -2.91 -0.02 3.83 16 13 C 0.03 1.53 5.42 84.66 0.46 1.99 16 14 N -0.90 -53.61 12.95 21.45 0.28 -53.33 16 15 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 19 O -0.37 -19.42 8.96 -126.22 -1.13 -20.55 16 20 H 0.05 1.72 7.66 -2.39 -0.02 1.70 16 21 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.03 1.35 7.69 -2.39 -0.02 1.33 16 23 H 0.06 1.60 6.44 -2.39 -0.02 1.59 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.53 7.70 -2.39 -0.02 1.51 16 26 H 0.03 1.31 7.69 -2.39 -0.02 1.29 16 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 1.88 6.44 -2.39 -0.02 1.87 16 29 H 0.07 2.64 6.44 -2.39 -0.02 2.62 16 30 H 0.09 2.73 6.45 -2.39 -0.02 2.72 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 2.73 8.03 -2.39 -0.02 2.71 16 33 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -63.55 270.39 4.70 -58.85 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.06 Total: 13.18 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 3.67 Total: -25.76 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.28 Total: -53.33 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -2.33 Total: -38.39 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -63.55 4.70 -58.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258573815.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.649 kcal (2) G-P(sol) polarization free energy of solvation -63.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds