Wall clock time and date at job start Mon Mar 30 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47391 * 2 1 4 4 C 1.53004 * 109.46702 * 239.99847 * 2 1 3 5 5 C 1.52995 * 109.47004 * 120.00497 * 2 1 3 6 6 C 1.52997 * 110.09765 * 59.29515 * 5 2 1 7 7 O 1.43787 * 110.11248 * 297.69670 * 5 2 1 8 8 C 1.43891 * 107.10722 * 215.67712 * 7 5 2 9 9 C 1.54446 * 105.08252 * 1.71179 * 8 7 5 10 10 H 1.09004 * 110.72952 * 263.44634 * 9 8 7 11 11 C 1.50700 * 110.73137 * 140.32829 * 9 8 7 12 12 H 1.08002 * 119.99925 * 359.97438 * 11 9 8 13 13 C 1.37875 * 120.00088 * 180.02562 * 11 9 8 14 14 N 1.31512 * 120.00081 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99893 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47064 * 89.99691 * 15 13 11 17 17 H 1.48492 * 109.46965 * 209.99485 * 15 13 11 18 18 H 1.48498 * 109.46757 * 329.99706 * 15 13 11 19 19 O 1.44395 * 110.11268 * 180.89309 * 5 2 1 20 20 H 1.09003 * 109.47172 * 300.00290 * 1 2 3 21 21 H 1.09006 * 109.47242 * 59.99663 * 1 2 3 22 22 H 1.08998 * 109.47887 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47319 * 180.02562 * 3 2 1 24 24 H 1.09009 * 109.46954 * 299.99904 * 3 2 1 25 25 H 1.08993 * 109.47197 * 59.99730 * 3 2 1 26 26 H 1.08993 * 109.47306 * 300.00256 * 4 2 1 27 27 H 1.09001 * 109.46959 * 60.00745 * 4 2 1 28 28 H 1.09006 * 109.46708 * 179.97438 * 4 2 1 29 29 H 1.09002 * 109.47153 * 59.99992 * 6 5 2 30 30 H 1.09001 * 109.46832 * 300.00183 * 6 5 2 31 31 H 1.09004 * 109.47261 * 180.02562 * 6 5 2 32 32 H 1.08999 * 110.31569 * 120.61443 * 8 7 5 33 33 H 1.08997 * 110.31824 * 242.80448 * 8 7 5 34 34 H 0.97004 * 120.00337 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2491 6 6 1.5234 -2.1613 1.2724 7 8 1.6130 -0.0238 2.4318 8 6 2.6749 -0.1366 3.3962 9 6 3.7912 -0.9231 2.6747 10 1 3.7399 -1.9829 2.9247 11 6 5.1469 -0.3613 3.0178 12 1 5.2282 0.4815 3.6881 13 6 6.2832 -0.9226 2.4750 14 7 6.1841 -1.9486 1.6583 15 14 7.9636 -0.2266 2.9008 16 1 8.4960 -0.9184 4.1022 17 1 8.8895 -0.4349 1.7587 18 1 7.8411 1.2267 3.1800 19 8 3.4836 -0.7112 1.2738 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3635 -1.0276 -0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6767 1.9563 0.8899 26 1 1.6765 -1.7489 -1.2493 27 1 1.6766 -0.2074 -2.1392 28 1 3.1299 -0.7209 -1.2495 29 1 1.8764 -2.6883 0.3859 30 1 0.4335 -2.1562 1.2821 31 1 1.8921 -2.6652 2.1659 32 1 3.0329 0.8523 3.6824 33 1 2.3324 -0.6846 4.2740 34 1 6.9836 -2.3438 1.2766 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258573818.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:20 Heat of formation + Delta-G solvation = -107.861908 kcal Electronic energy + Delta-G solvation = -15795.771079 eV Core-core repulsion = 13307.343586 eV Total energy + Delta-G solvation = -2488.427493 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.66288 -35.87635 -33.77519 -32.45828 -29.63810 -28.38796 -26.81693 -26.27354 -24.74045 -22.12716 -20.98619 -18.14805 -16.88044 -15.48460 -15.28368 -14.73661 -14.40720 -14.16868 -13.48054 -13.18377 -12.93123 -12.36435 -12.18220 -11.88397 -11.54527 -11.45299 -11.42649 -11.11230 -10.95353 -10.92823 -10.59626 -10.57041 -10.23531 -10.17491 -9.89508 -9.31099 -8.87068 -8.66087 -8.24823 -6.13107 -4.26913 3.25504 3.32534 3.36179 4.33362 4.59948 4.86042 5.26134 5.31786 5.49231 5.64319 5.86596 5.92243 6.01070 6.07162 6.15181 6.18470 6.22282 6.29827 6.37242 6.37797 6.42901 6.49777 6.56021 6.68216 6.84422 6.91120 7.01245 7.19504 7.35175 7.77027 8.11377 8.44013 8.81991 9.44506 10.94867 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041539 B = 0.010060 C = 0.009646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.909678 B = 2782.736808 C = 2901.932287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C -0.132 4.132 4 C -0.137 4.137 5 C 0.249 3.751 6 C -0.179 4.179 7 O -0.396 6.396 8 C 0.024 3.976 9 C 0.181 3.819 10 H 0.039 0.961 11 C -0.532 4.532 12 H 0.067 0.933 13 C 0.078 3.922 14 N -0.863 5.863 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 O -0.345 6.345 20 H 0.059 0.941 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.981 1.757 -2.583 8.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.053 4.053 3 C -0.189 4.189 4 C -0.194 4.194 5 C 0.171 3.829 6 C -0.237 4.237 7 O -0.318 6.318 8 C -0.052 4.052 9 C 0.126 3.874 10 H 0.057 0.943 11 C -0.569 4.569 12 H 0.085 0.915 13 C -0.128 4.128 14 N -0.499 5.499 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 O -0.266 6.266 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.926 1.755 -2.859 8.606 hybrid contribution 0.970 0.074 0.364 1.039 sum -6.955 1.829 -2.495 7.612 Atomic orbital electron populations 1.21867 0.94655 1.01460 1.01473 1.20482 0.94965 0.96252 0.93578 1.21702 1.02294 0.94423 1.00493 1.21846 1.02633 0.99411 0.95554 1.23297 0.83966 0.89845 0.85785 1.22566 1.00733 0.97440 1.02921 1.88703 1.41444 1.76297 1.25344 1.24067 0.88158 1.01200 0.91795 1.21286 0.93328 0.95205 0.77577 0.94289 1.20914 0.89118 1.17546 1.29353 0.91520 1.25076 0.99546 0.94280 0.93906 1.70019 1.29311 1.21603 1.28923 0.86526 0.83355 0.79700 0.78026 1.20396 1.20979 1.19593 1.89798 1.15213 1.92413 1.29144 0.92167 0.93081 0.92795 0.91537 0.93848 0.92521 0.92859 0.93257 0.91230 0.91211 0.92203 0.92288 0.91223 0.92505 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 7.99 37.16 0.30 -1.77 16 2 C -0.05 -0.94 0.48 -154.51 -0.07 -1.02 16 3 C -0.13 -2.38 8.17 37.16 0.30 -2.08 16 4 C -0.14 -2.32 8.02 37.16 0.30 -2.02 16 5 C 0.25 5.26 0.46 -26.73 -0.01 5.24 16 6 C -0.18 -3.41 8.35 37.16 0.31 -3.10 16 7 O -0.40 -8.59 9.68 -59.28 -0.57 -9.16 16 8 C 0.02 0.55 7.62 37.92 0.29 0.83 16 9 C 0.18 4.70 2.68 -27.12 -0.07 4.63 16 10 H 0.04 1.08 7.36 -51.93 -0.38 0.69 16 11 C -0.53 -14.79 8.81 -34.44 -0.30 -15.09 16 12 H 0.07 1.79 7.55 -52.49 -0.40 1.40 16 13 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 14 N -0.86 -25.13 13.16 55.43 0.73 -24.40 16 15 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 O -0.35 -8.90 9.56 -59.28 -0.57 -9.46 16 20 H 0.06 0.94 7.78 -51.93 -0.40 0.54 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.76 6.47 -51.93 -0.34 0.42 16 23 H 0.07 1.36 7.69 -51.93 -0.40 0.96 16 24 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.06 1.04 7.65 -51.93 -0.40 0.65 16 26 H 0.05 0.84 6.50 -51.93 -0.34 0.51 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.35 7.74 -51.93 -0.40 0.95 16 29 H 0.07 1.29 6.51 -51.93 -0.34 0.95 16 30 H 0.06 0.99 6.48 -51.93 -0.34 0.65 16 31 H 0.06 1.18 7.04 -51.93 -0.37 0.81 16 32 H 0.07 1.54 7.67 -51.93 -0.40 1.14 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 268.58 15.07 4.05 4.05 Total: -1.00 -29.50 268.58 -5.76 -35.26 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.32 Total: -0.09 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 0.94 Total: -12.28 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.73 Total: -24.40 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -1.14 Total: -18.62 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.50 -5.76 -35.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258573818.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.601 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds