Wall clock time and date at job start Mon Mar 30 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47391 * 2 1 4 4 C 1.53004 * 109.46702 * 239.99847 * 2 1 3 5 5 C 1.52995 * 109.47004 * 120.00497 * 2 1 3 6 6 C 1.52997 * 110.09765 * 59.29515 * 5 2 1 7 7 O 1.43787 * 110.11248 * 297.69670 * 5 2 1 8 8 C 1.43891 * 107.10722 * 215.67712 * 7 5 2 9 9 C 1.54446 * 105.08252 * 1.71179 * 8 7 5 10 10 H 1.09004 * 110.72952 * 263.44634 * 9 8 7 11 11 C 1.50700 * 110.73137 * 140.32829 * 9 8 7 12 12 H 1.08002 * 119.99925 * 359.97438 * 11 9 8 13 13 C 1.37875 * 120.00088 * 180.02562 * 11 9 8 14 14 N 1.31512 * 120.00081 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99893 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47064 * 89.99691 * 15 13 11 17 17 H 1.48492 * 109.46965 * 209.99485 * 15 13 11 18 18 H 1.48498 * 109.46757 * 329.99706 * 15 13 11 19 19 O 1.44395 * 110.11268 * 180.89309 * 5 2 1 20 20 H 1.09003 * 109.47172 * 300.00290 * 1 2 3 21 21 H 1.09006 * 109.47242 * 59.99663 * 1 2 3 22 22 H 1.08998 * 109.47887 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47319 * 180.02562 * 3 2 1 24 24 H 1.09009 * 109.46954 * 299.99904 * 3 2 1 25 25 H 1.08993 * 109.47197 * 59.99730 * 3 2 1 26 26 H 1.08993 * 109.47306 * 300.00256 * 4 2 1 27 27 H 1.09001 * 109.46959 * 60.00745 * 4 2 1 28 28 H 1.09006 * 109.46708 * 179.97438 * 4 2 1 29 29 H 1.09002 * 109.47153 * 59.99992 * 6 5 2 30 30 H 1.09001 * 109.46832 * 300.00183 * 6 5 2 31 31 H 1.09004 * 109.47261 * 180.02562 * 6 5 2 32 32 H 1.08999 * 110.31569 * 120.61443 * 8 7 5 33 33 H 1.08997 * 110.31824 * 242.80448 * 8 7 5 34 34 H 0.97004 * 120.00337 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2491 6 6 1.5234 -2.1613 1.2724 7 8 1.6130 -0.0238 2.4318 8 6 2.6749 -0.1366 3.3962 9 6 3.7912 -0.9231 2.6747 10 1 3.7399 -1.9829 2.9247 11 6 5.1469 -0.3613 3.0178 12 1 5.2282 0.4815 3.6881 13 6 6.2832 -0.9226 2.4750 14 7 6.1841 -1.9486 1.6583 15 14 7.9636 -0.2266 2.9008 16 1 8.4960 -0.9184 4.1022 17 1 8.8895 -0.4349 1.7587 18 1 7.8411 1.2267 3.1800 19 8 3.4836 -0.7112 1.2738 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3635 -1.0276 -0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6767 1.9563 0.8899 26 1 1.6765 -1.7489 -1.2493 27 1 1.6766 -0.2074 -2.1392 28 1 3.1299 -0.7209 -1.2495 29 1 1.8764 -2.6883 0.3859 30 1 0.4335 -2.1562 1.2821 31 1 1.8921 -2.6652 2.1659 32 1 3.0329 0.8523 3.6824 33 1 2.3324 -0.6846 4.2740 34 1 6.9836 -2.3438 1.2766 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258573818.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:19 Heat of formation + Delta-G solvation = -126.178065 kcal Electronic energy + Delta-G solvation = -15796.565327 eV Core-core repulsion = 13307.343586 eV Total energy + Delta-G solvation = -2489.221741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38520 -37.40408 -35.65463 -34.50415 -31.35230 -30.17949 -28.10986 -27.69830 -26.73591 -23.71218 -22.93770 -19.73858 -18.86541 -17.30775 -17.03487 -16.52898 -16.24157 -15.81433 -14.94638 -14.77260 -14.53124 -14.22934 -13.75203 -13.49992 -13.16808 -13.00870 -12.88860 -12.81083 -12.68155 -12.45437 -12.34930 -12.24744 -11.75906 -11.65936 -11.61893 -11.18408 -10.86188 -10.56468 -10.10729 -8.24684 -6.46225 1.39185 1.40898 1.51844 2.35788 2.87143 3.01872 3.49671 3.86505 3.98894 4.16467 4.25291 4.33016 4.43339 4.49653 4.55707 4.74796 4.79915 4.83610 4.91386 4.98001 5.00770 5.06908 5.10563 5.22018 5.28536 5.30996 5.45355 5.59524 5.60835 5.62989 6.05641 6.52465 6.75943 7.29601 8.84067 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.041539 B = 0.010060 C = 0.009646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.909678 B = 2782.736808 C = 2901.932287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 C -0.127 4.127 4 C -0.132 4.132 5 C 0.236 3.764 6 C -0.175 4.175 7 O -0.395 6.395 8 C 0.033 3.967 9 C 0.177 3.823 10 H 0.012 0.988 11 C -0.555 4.555 12 H 0.069 0.931 13 C 0.026 3.974 14 N -0.899 5.899 15 Si 0.967 3.033 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.265 1.265 19 O -0.374 6.374 20 H 0.053 0.947 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.020 2.449 -3.049 9.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.057 4.057 3 C -0.185 4.185 4 C -0.189 4.189 5 C 0.159 3.841 6 C -0.232 4.232 7 O -0.317 6.317 8 C -0.044 4.044 9 C 0.121 3.879 10 H 0.030 0.970 11 C -0.592 4.592 12 H 0.087 0.913 13 C -0.177 4.177 14 N -0.536 5.536 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.190 1.190 19 O -0.295 6.295 20 H 0.072 0.928 21 H 0.097 0.903 22 H 0.084 0.916 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.981 2.451 -3.315 9.882 hybrid contribution 1.230 -0.151 0.486 1.331 sum -7.751 2.299 -2.829 8.566 Atomic orbital electron populations 1.21817 0.91693 1.02631 1.02565 1.20626 0.97232 0.95609 0.92234 1.21656 1.00010 0.95100 1.01696 1.21804 1.00296 1.00441 0.96386 1.23805 0.81939 0.91441 0.86929 1.22536 1.02551 0.95922 1.02196 1.88677 1.40919 1.76643 1.25456 1.23944 0.87321 1.00857 0.92256 1.21136 0.94132 0.94093 0.78536 0.97005 1.21302 0.90522 1.17713 1.29671 0.91268 1.25957 1.03583 0.94488 0.93653 1.70145 1.30402 1.22961 1.30109 0.85437 0.78289 0.79156 0.78050 1.19121 1.20740 1.18955 1.89734 1.18460 1.92571 1.28746 0.92791 0.90315 0.91593 0.95002 0.90624 0.93292 0.91889 0.90142 0.94815 0.90965 0.89146 0.94058 0.91234 0.90408 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 7.99 71.98 0.58 -2.88 16 2 C -0.06 -1.94 0.48 -52.18 -0.03 -1.96 16 3 C -0.13 -4.46 8.17 71.98 0.59 -3.87 16 4 C -0.13 -4.24 8.02 71.98 0.58 -3.67 16 5 C 0.24 9.85 0.46 30.59 0.01 9.87 16 6 C -0.17 -6.50 8.35 71.98 0.60 -5.90 16 7 O -0.40 -16.83 9.68 -125.99 -1.22 -18.05 16 8 C 0.03 1.47 7.62 72.47 0.55 2.02 16 9 C 0.18 9.41 2.68 30.34 0.08 9.49 16 10 H 0.01 0.70 7.36 -2.38 -0.02 0.68 16 11 C -0.56 -31.46 8.81 25.60 0.23 -31.23 16 12 H 0.07 3.76 7.55 -2.91 -0.02 3.74 16 13 C 0.03 1.47 5.45 84.65 0.46 1.93 16 14 N -0.90 -53.70 13.16 21.45 0.28 -53.42 16 15 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 19 O -0.37 -19.77 9.56 -125.99 -1.20 -20.97 16 20 H 0.05 1.51 7.78 -2.39 -0.02 1.49 16 21 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 22 H 0.07 1.59 6.47 -2.39 -0.02 1.58 16 23 H 0.03 1.30 7.69 -2.39 -0.02 1.28 16 24 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 25 H 0.05 1.75 7.65 -2.39 -0.02 1.73 16 26 H 0.06 1.87 6.50 -2.39 -0.02 1.85 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.03 1.30 7.74 -2.38 -0.02 1.29 16 29 H 0.07 2.62 6.51 -2.39 -0.02 2.60 16 30 H 0.09 2.76 6.48 -2.39 -0.02 2.75 16 31 H 0.04 1.65 7.04 -2.38 -0.02 1.63 16 32 H 0.07 3.08 7.67 -2.39 -0.02 3.06 16 33 H 0.08 3.10 8.14 -2.39 -0.02 3.09 16 34 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -64.32 268.58 4.60 -59.72 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.06 Total: 13.20 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 3.65 Total: -26.19 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.28 Total: -53.42 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -2.42 Total: -39.03 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -64.32 4.60 -59.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258573818.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.460 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds