Wall clock time and date at job start Mon Mar 30 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 C 1.52997 * 109.47110 * 239.99415 * 2 1 3 5 5 C 1.52998 * 109.46543 * 119.99764 * 2 1 3 6 6 C 1.53005 * 110.09671 * 299.85601 * 5 2 1 7 7 O 1.44385 * 110.11818 * 61.45574 * 5 2 1 8 8 C 1.44833 * 103.23735 * 158.46176 * 7 5 2 9 9 C 1.54458 * 103.05574 * 323.29741 * 8 7 5 10 10 H 1.09002 * 110.31771 * 262.98376 * 9 8 7 11 11 C 1.50700 * 110.31700 * 140.78838 * 9 8 7 12 12 H 1.07997 * 119.99912 * 0.02562 * 11 9 8 13 13 C 1.37877 * 119.99906 * 180.02562 * 11 9 8 14 14 N 1.31517 * 119.99829 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 120.00171 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47250 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47391 * 119.99611 * 15 13 11 18 18 H 1.48495 * 109.47217 * 239.99748 * 15 13 11 19 19 O 1.43789 * 110.16708 * 178.23070 * 5 2 1 20 20 H 1.08997 * 109.47695 * 300.00834 * 1 2 3 21 21 H 1.09004 * 109.47065 * 60.00620 * 1 2 3 22 22 H 1.08996 * 109.47386 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46338 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47039 * 299.99205 * 3 2 1 25 25 H 1.08993 * 109.47373 * 59.99822 * 3 2 1 26 26 H 1.08996 * 109.47094 * 300.00486 * 4 2 1 27 27 H 1.08999 * 109.47341 * 60.00484 * 4 2 1 28 28 H 1.08997 * 109.46694 * 180.02562 * 4 2 1 29 29 H 1.08996 * 109.47124 * 180.89514 * 6 5 2 30 30 H 1.09002 * 109.46756 * 300.90139 * 6 5 2 31 31 H 1.09004 * 109.46359 * 60.89651 * 6 5 2 32 32 H 1.09002 * 110.73001 * 81.73983 * 8 7 5 33 33 H 1.08997 * 110.73153 * 204.85859 * 8 7 5 34 34 H 0.96999 * 119.99746 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2493 6 6 1.5406 -0.0090 2.5081 7 8 1.5946 -2.0947 1.2463 8 6 2.5345 -2.7500 2.1322 9 6 3.8657 -2.0304 1.8224 10 1 4.4524 -2.6101 1.1098 11 6 4.6492 -1.8107 3.0909 12 1 4.2507 -2.1465 4.0368 13 6 5.8749 -1.1811 3.0437 14 7 6.3604 -0.7726 1.8917 15 14 6.8458 -0.9081 4.6160 16 1 6.0864 -1.4565 5.7683 17 1 8.1568 -1.5982 4.5144 18 1 7.0664 0.5468 4.8153 19 8 3.4770 -0.7662 1.2439 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6766 1.9563 0.8899 26 1 1.6766 -1.7490 -1.2491 27 1 1.6768 -0.2076 -2.1392 28 1 3.1300 -0.7217 -1.2488 29 1 1.9225 -0.5213 3.3911 30 1 1.8929 1.0226 2.5057 31 1 0.4508 -0.0207 2.5240 32 1 2.2497 -2.6029 3.1740 33 1 2.6072 -3.8124 1.8999 34 1 7.2229 -0.3299 1.8585 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258573822.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:21 Heat of formation + Delta-G solvation = -106.760656 kcal Electronic energy + Delta-G solvation = -15841.699369 eV Core-core repulsion = 13353.319629 eV Total energy + Delta-G solvation = -2488.379739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.64177 -35.86808 -33.74301 -32.35648 -29.53168 -28.43753 -26.81109 -26.27606 -24.68426 -22.08773 -20.94354 -18.18035 -16.70861 -15.96639 -15.27734 -14.76785 -14.25995 -13.67162 -13.47426 -13.26829 -12.87074 -12.26952 -12.12608 -11.83439 -11.70764 -11.42756 -11.34928 -10.98872 -10.96272 -10.90288 -10.59976 -10.51415 -10.23890 -10.13938 -10.12019 -9.32858 -8.97638 -8.58707 -8.02664 -6.06913 -4.21885 3.25615 3.33904 3.36993 4.36602 4.62600 4.86718 5.28882 5.34343 5.51266 5.62653 5.90788 5.94695 6.01727 6.08073 6.13608 6.18697 6.21402 6.33614 6.36702 6.37750 6.41892 6.49165 6.57802 6.73000 6.88159 6.91823 6.98961 7.12851 7.51626 7.79872 8.16742 8.51364 8.89738 9.50233 10.99967 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042163 B = 0.010305 C = 0.009811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.926381 B = 2716.586820 C = 2853.372508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C -0.137 4.137 4 C -0.132 4.132 5 C 0.257 3.743 6 C -0.178 4.178 7 O -0.391 6.391 8 C 0.019 3.981 9 C 0.184 3.816 10 H 0.050 0.950 11 C -0.546 4.546 12 H 0.062 0.938 13 C 0.081 3.919 14 N -0.861 5.861 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 O -0.355 6.355 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 1.484 -2.302 8.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.054 4.054 3 C -0.194 4.194 4 C -0.189 4.189 5 C 0.179 3.821 6 C -0.236 4.236 7 O -0.313 6.313 8 C -0.057 4.057 9 C 0.129 3.871 10 H 0.067 0.933 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.125 4.125 14 N -0.497 5.497 15 Si 0.718 3.282 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 O -0.276 6.276 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.290 1.639 -2.595 8.840 hybrid contribution 0.629 0.121 1.134 1.302 sum -7.661 1.759 -1.461 7.995 Atomic orbital electron populations 1.21870 0.94700 1.01950 1.00959 1.20516 0.94902 0.95527 0.94499 1.21838 1.02685 0.94292 1.00592 1.21706 1.02276 0.99804 0.95152 1.23244 0.83489 0.82598 0.92726 1.22552 1.00071 1.01781 0.99166 1.89240 1.53187 1.21676 1.67148 1.24362 0.89985 0.97660 0.93700 1.21092 0.90271 0.81544 0.94190 0.93259 1.21256 1.03077 1.41134 0.92842 0.92013 1.25034 0.97168 0.94297 0.96030 1.70040 1.18216 1.37127 1.24278 0.86573 0.79933 0.78047 0.83614 1.19628 1.20821 1.20807 1.89237 1.15407 1.40028 1.82945 0.92777 0.93102 0.92228 0.91165 0.93292 0.92853 0.92616 0.93803 0.91549 0.91614 0.91409 0.92616 0.92233 0.90108 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.01 37.16 0.30 -1.78 16 2 C -0.05 -0.97 0.48 -154.51 -0.07 -1.04 16 3 C -0.14 -2.32 8.01 37.16 0.30 -2.02 16 4 C -0.13 -2.35 8.17 37.16 0.30 -2.05 16 5 C 0.26 5.43 0.46 -26.73 -0.01 5.42 16 6 C -0.18 -3.47 8.35 37.16 0.31 -3.16 16 7 O -0.39 -8.38 10.00 -59.28 -0.59 -8.98 16 8 C 0.02 0.42 6.85 37.92 0.26 0.68 16 9 C 0.18 4.76 3.52 -27.12 -0.10 4.67 16 10 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 11 C -0.55 -14.98 8.78 -34.44 -0.30 -15.29 16 12 H 0.06 1.65 7.54 -52.49 -0.40 1.25 16 13 C 0.08 2.26 5.43 -17.82 -0.10 2.16 16 14 N -0.86 -25.20 13.07 55.43 0.72 -24.47 16 15 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 O -0.36 -9.10 9.10 -59.28 -0.54 -9.64 16 20 H 0.05 0.77 6.51 -51.93 -0.34 0.43 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 23 H 0.07 1.37 7.76 -51.92 -0.40 0.97 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.85 6.46 -51.93 -0.34 0.52 16 26 H 0.05 1.00 7.67 -51.93 -0.40 0.61 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.33 7.67 -51.93 -0.40 0.93 16 29 H 0.06 1.37 7.07 -51.93 -0.37 1.00 16 30 H 0.07 1.28 6.44 -51.93 -0.33 0.95 16 31 H 0.05 0.94 6.54 -51.93 -0.34 0.60 16 32 H 0.06 1.27 6.92 -51.93 -0.36 0.91 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 268.43 15.07 4.05 4.05 Total: -1.00 -29.49 268.43 -5.82 -35.31 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.32 Total: 0.07 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 0.89 Total: -12.41 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.72 Total: -24.47 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -1.13 Total: -18.62 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.49 -5.82 -35.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258573822.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.453 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds