Wall clock time and date at job start Mon Mar 30 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 C 1.52997 * 109.47110 * 239.99415 * 2 1 3 5 5 C 1.52998 * 109.46543 * 119.99764 * 2 1 3 6 6 C 1.53005 * 110.09671 * 299.85601 * 5 2 1 7 7 O 1.44385 * 110.11818 * 61.45574 * 5 2 1 8 8 C 1.44833 * 103.23735 * 158.46176 * 7 5 2 9 9 C 1.54458 * 103.05574 * 323.29741 * 8 7 5 10 10 H 1.09002 * 110.31771 * 262.98376 * 9 8 7 11 11 C 1.50700 * 110.31700 * 140.78838 * 9 8 7 12 12 H 1.07997 * 119.99912 * 0.02562 * 11 9 8 13 13 C 1.37877 * 119.99906 * 180.02562 * 11 9 8 14 14 N 1.31517 * 119.99829 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 120.00171 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47250 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47391 * 119.99611 * 15 13 11 18 18 H 1.48495 * 109.47217 * 239.99748 * 15 13 11 19 19 O 1.43789 * 110.16708 * 178.23070 * 5 2 1 20 20 H 1.08997 * 109.47695 * 300.00834 * 1 2 3 21 21 H 1.09004 * 109.47065 * 60.00620 * 1 2 3 22 22 H 1.08996 * 109.47386 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46338 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47039 * 299.99205 * 3 2 1 25 25 H 1.08993 * 109.47373 * 59.99822 * 3 2 1 26 26 H 1.08996 * 109.47094 * 300.00486 * 4 2 1 27 27 H 1.08999 * 109.47341 * 60.00484 * 4 2 1 28 28 H 1.08997 * 109.46694 * 180.02562 * 4 2 1 29 29 H 1.08996 * 109.47124 * 180.89514 * 6 5 2 30 30 H 1.09002 * 109.46756 * 300.90139 * 6 5 2 31 31 H 1.09004 * 109.46359 * 60.89651 * 6 5 2 32 32 H 1.09002 * 110.73001 * 81.73983 * 8 7 5 33 33 H 1.08997 * 110.73153 * 204.85859 * 8 7 5 34 34 H 0.96999 * 119.99746 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2493 6 6 1.5406 -0.0090 2.5081 7 8 1.5946 -2.0947 1.2463 8 6 2.5345 -2.7500 2.1322 9 6 3.8657 -2.0304 1.8224 10 1 4.4524 -2.6101 1.1098 11 6 4.6492 -1.8107 3.0909 12 1 4.2507 -2.1465 4.0368 13 6 5.8749 -1.1811 3.0437 14 7 6.3604 -0.7726 1.8917 15 14 6.8458 -0.9081 4.6160 16 1 6.0864 -1.4565 5.7683 17 1 8.1568 -1.5982 4.5144 18 1 7.0664 0.5468 4.8153 19 8 3.4770 -0.7662 1.2439 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6766 1.9563 0.8899 26 1 1.6766 -1.7490 -1.2491 27 1 1.6768 -0.2076 -2.1392 28 1 3.1300 -0.7217 -1.2488 29 1 1.9225 -0.5213 3.3911 30 1 1.8929 1.0226 2.5057 31 1 0.4508 -0.0207 2.5240 32 1 2.2497 -2.6029 3.1740 33 1 2.6072 -3.8124 1.8999 34 1 7.2229 -0.3299 1.8585 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258573822.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:21 Heat of formation + Delta-G solvation = -125.056804 kcal Electronic energy + Delta-G solvation = -15842.492749 eV Core-core repulsion = 13353.319629 eV Total energy + Delta-G solvation = -2489.173120 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.35318 -37.38914 -35.62003 -34.40310 -31.24131 -30.22544 -28.09832 -27.70235 -26.67025 -23.67111 -22.89210 -19.72568 -18.80565 -17.64036 -16.97081 -16.70874 -15.93220 -15.42653 -14.94615 -14.80316 -14.53049 -14.06503 -13.78302 -13.53419 -13.20493 -12.85854 -12.82391 -12.82211 -12.64927 -12.50849 -12.31609 -12.22879 -11.86455 -11.67765 -11.61754 -11.17445 -10.82594 -10.61773 -9.92660 -8.18290 -6.40675 1.38852 1.40074 1.52205 2.37711 2.92626 3.06171 3.47513 3.89218 4.01965 4.15806 4.29681 4.31823 4.45489 4.49750 4.60445 4.76629 4.81004 4.84420 4.91960 4.98324 5.03901 5.07673 5.14670 5.22679 5.27413 5.35579 5.49611 5.59918 5.63142 5.66114 6.09341 6.58088 6.87401 7.35895 8.89450 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042163 B = 0.010305 C = 0.009811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.926381 B = 2716.586820 C = 2853.372508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 C -0.132 4.132 4 C -0.127 4.127 5 C 0.243 3.757 6 C -0.173 4.173 7 O -0.390 6.390 8 C 0.029 3.971 9 C 0.178 3.822 10 H 0.014 0.986 11 C -0.559 4.559 12 H 0.066 0.934 13 C 0.027 3.973 14 N -0.901 5.901 15 Si 0.961 3.039 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.281 1.281 19 O -0.383 6.383 20 H 0.065 0.935 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.033 0.967 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.036 2.110 -1.754 10.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C -0.189 4.189 4 C -0.185 4.185 5 C 0.166 3.834 6 C -0.231 4.231 7 O -0.311 6.311 8 C -0.048 4.048 9 C 0.122 3.878 10 H 0.032 0.968 11 C -0.596 4.596 12 H 0.084 0.916 13 C -0.176 4.176 14 N -0.538 5.538 15 Si 0.786 3.214 16 H -0.185 1.185 17 H -0.202 1.202 18 H -0.207 1.207 19 O -0.305 6.305 20 H 0.084 0.916 21 H 0.096 0.904 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.946 2.256 -2.043 10.401 hybrid contribution 1.100 -0.081 0.901 1.424 sum -8.846 2.175 -1.142 9.181 Atomic orbital electron populations 1.21818 0.91746 1.02217 1.02932 1.20650 0.97154 0.95429 0.92631 1.21796 1.00320 0.94160 1.02619 1.21657 0.99969 1.00013 0.96816 1.23745 0.81516 0.82837 0.95277 1.22513 1.01900 1.01290 0.97385 1.89228 1.52737 1.22017 1.67102 1.24248 0.87939 0.98375 0.94191 1.20944 0.91940 0.82067 0.92844 0.96844 1.21591 1.03647 1.40876 0.93509 0.91559 1.25908 0.98320 0.94026 0.99306 1.70181 1.18732 1.38255 1.26615 0.85479 0.78482 0.77830 0.79650 1.18463 1.20161 1.20687 1.89176 1.18547 1.39683 1.83061 0.91636 0.90363 0.92796 0.94795 0.90206 0.91890 0.93292 0.90629 0.95063 0.93518 0.91203 0.89562 0.91512 0.88065 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.01 71.98 0.58 -2.88 16 2 C -0.06 -1.99 0.48 -52.18 -0.03 -2.02 16 3 C -0.13 -4.25 8.01 71.98 0.58 -3.67 16 4 C -0.13 -4.43 8.17 71.98 0.59 -3.85 16 5 C 0.24 10.12 0.46 30.60 0.01 10.13 16 6 C -0.17 -6.49 8.35 71.98 0.60 -5.89 16 7 O -0.39 -16.36 10.00 -125.98 -1.26 -17.62 16 8 C 0.03 1.26 6.85 72.48 0.50 1.75 16 9 C 0.18 9.45 3.52 30.34 0.11 9.55 16 10 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 11 C -0.56 -31.14 8.78 25.60 0.22 -30.92 16 12 H 0.07 3.53 7.54 -2.91 -0.02 3.51 16 13 C 0.03 1.52 5.43 84.65 0.46 1.98 16 14 N -0.90 -54.27 13.07 21.45 0.28 -53.99 16 15 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 O -0.38 -20.17 9.10 -125.98 -1.15 -21.31 16 20 H 0.06 1.59 6.51 -2.39 -0.02 1.58 16 21 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 22 H 0.05 1.50 7.75 -2.39 -0.02 1.48 16 23 H 0.03 1.32 7.76 -2.38 -0.02 1.30 16 24 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.06 1.88 6.46 -2.39 -0.02 1.86 16 26 H 0.05 1.73 7.67 -2.39 -0.02 1.71 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 28 H 0.03 1.27 7.67 -2.39 -0.02 1.26 16 29 H 0.05 1.90 7.07 -2.39 -0.02 1.88 16 30 H 0.07 2.55 6.44 -2.39 -0.02 2.54 16 31 H 0.09 2.66 6.54 -2.39 -0.02 2.64 16 32 H 0.07 2.79 6.92 -2.39 -0.02 2.77 16 33 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -64.48 268.43 4.58 -59.90 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.06 Total: 13.19 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 3.62 Total: -25.81 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.28 Total: -53.99 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -2.41 Total: -38.93 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -64.48 4.58 -59.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258573822.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.162 kcal (2) G-P(sol) polarization free energy of solvation -64.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds