Wall clock time and date at job start Mon Mar 30 2020 02:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 C 1.52993 * 109.47162 * 120.00076 * 2 1 3 5 5 C 1.52996 * 109.47324 * 66.25445 * 4 2 1 6 6 C 1.53003 * 109.50996 * 54.10107 * 5 4 2 7 7 O 1.43752 * 109.63165 * 293.78131 * 5 4 2 8 8 C 1.44789 * 104.81869 * 215.80612 * 7 5 4 9 9 C 1.54910 * 101.71907 * 36.10316 * 8 7 5 10 10 H 1.09007 * 110.84551 * 82.90759 * 9 8 7 11 11 C 1.50696 * 110.69828 * 206.04202 * 9 8 7 12 12 H 1.08008 * 119.99890 * 355.10723 * 11 9 8 13 13 C 1.37880 * 120.00480 * 175.11279 * 11 9 8 14 14 N 1.31515 * 119.99852 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00034 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47140 * 270.00072 * 15 13 11 17 17 H 1.48496 * 109.47202 * 29.99700 * 15 13 11 18 18 H 1.48496 * 109.46914 * 150.00119 * 15 13 11 19 19 O 1.43374 * 109.63730 * 174.42111 * 5 4 2 20 20 H 1.08995 * 109.46706 * 172.12755 * 1 2 3 21 21 H 1.08999 * 109.46598 * 292.12172 * 1 2 3 22 22 H 1.08998 * 109.46973 * 52.12540 * 1 2 3 23 23 H 1.09002 * 109.46766 * 239.99932 * 2 1 3 24 24 H 1.09002 * 109.47099 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47476 * 300.00104 * 3 2 1 26 26 H 1.08998 * 109.47203 * 59.99854 * 3 2 1 27 27 H 1.09001 * 109.47157 * 306.25203 * 4 2 1 28 28 H 1.09010 * 109.47447 * 186.25271 * 4 2 1 29 29 H 1.08991 * 109.47316 * 179.61841 * 6 5 4 30 30 H 1.09007 * 109.46648 * 299.62049 * 6 5 4 31 31 H 1.08999 * 109.46716 * 59.61799 * 6 5 4 32 32 H 1.08996 * 110.97645 * 277.99580 * 8 7 5 33 33 H 1.08993 * 110.97720 * 154.21081 * 8 7 5 34 34 H 0.97003 * 119.99679 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6625 -2.2019 1.1731 6 6 2.1717 -2.7921 -0.1434 7 8 0.2333 -2.3401 1.2435 8 6 0.0157 -3.5567 1.9978 9 6 1.1716 -3.4996 3.0274 10 1 0.9034 -2.8719 3.8773 11 6 1.5437 -4.8854 3.4879 12 1 0.9674 -5.7371 3.1576 13 6 2.6197 -5.0662 4.3309 14 7 3.3216 -4.0292 4.7328 15 14 3.0803 -6.7840 4.9022 16 1 2.3582 -7.0972 6.1615 17 1 2.7045 -7.7704 3.8577 18 1 4.5444 -6.8500 5.1416 19 8 2.2493 -2.9061 2.2756 20 1 -0.3632 -1.0180 -0.1408 21 1 -0.3632 0.3870 0.9520 22 1 -0.3633 0.6309 -0.8112 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.5882 -0.2761 2.1356 28 1 3.1244 -0.6253 1.3069 29 1 1.9084 -3.8485 -0.1940 30 1 1.7144 -2.2632 -0.9797 31 1 3.2552 -2.6850 -0.1945 32 1 0.1063 -4.4342 1.3576 33 1 -0.9530 -3.5382 2.4972 34 1 3.0821 -3.1372 4.4364 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258596175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:37 Heat of formation + Delta-G solvation = -116.051949 kcal Electronic energy + Delta-G solvation = -15472.723532 eV Core-core repulsion = 12983.940893 eV Total energy + Delta-G solvation = -2488.782640 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.65532 -36.07099 -34.05528 -32.73705 -30.64295 -27.90104 -26.87116 -26.41566 -24.23069 -21.45498 -21.02947 -19.19493 -17.20237 -16.21554 -15.67889 -14.72502 -14.20184 -13.87599 -13.68127 -13.47388 -13.09532 -12.61772 -12.19985 -12.07512 -12.01018 -11.68739 -11.34874 -11.32967 -11.21241 -10.78704 -10.54771 -10.49006 -10.41227 -10.18723 -10.11388 -9.12959 -8.98966 -8.55084 -8.15869 -6.44740 -4.24561 3.39681 3.44137 3.59930 4.38256 4.50797 4.77041 5.13255 5.22662 5.29109 5.45434 5.64629 5.72427 5.85445 5.87843 5.94408 6.00007 6.03245 6.10572 6.11222 6.23647 6.29290 6.33172 6.44523 6.52380 6.58080 6.70284 6.81350 6.86057 7.23824 7.97568 8.21317 8.44222 8.77804 9.59017 10.97242 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054399 B = 0.008282 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.590281 B = 3380.077332 C = 3560.145651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.114 4.114 5 C 0.250 3.750 6 C -0.166 4.166 7 O -0.385 6.385 8 C 0.025 3.975 9 C 0.169 3.831 10 H 0.032 0.968 11 C -0.615 4.615 12 H 0.059 0.941 13 C 0.034 3.966 14 N -0.887 5.887 15 Si 1.074 2.926 16 H -0.286 1.286 17 H -0.288 1.288 18 H -0.283 1.283 19 O -0.377 6.377 20 H 0.076 0.924 21 H 0.050 0.950 22 H 0.040 0.960 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 5.712 -8.174 10.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.152 4.152 5 C 0.172 3.828 6 C -0.224 4.224 7 O -0.307 6.307 8 C -0.051 4.051 9 C 0.114 3.886 10 H 0.050 0.950 11 C -0.652 4.652 12 H 0.077 0.923 13 C -0.175 4.175 14 N -0.521 5.521 15 Si 0.902 3.098 16 H -0.212 1.212 17 H -0.214 1.214 18 H -0.208 1.208 19 O -0.299 6.299 20 H 0.094 0.906 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.518 5.023 -7.292 9.206 hybrid contribution -1.158 0.742 -0.943 1.667 sum -3.676 5.765 -8.235 10.703 Atomic orbital electron populations 1.21912 0.94789 1.02838 1.00578 1.21160 0.96586 0.95466 0.98214 1.21843 1.00710 0.96402 1.01307 1.21954 1.01242 0.93793 0.98162 1.23057 0.78557 0.91850 0.89323 1.22380 1.01536 1.01538 0.96954 1.89115 1.22616 1.43305 1.75634 1.24369 1.00563 0.86802 0.93403 1.21423 0.82786 0.94663 0.89693 0.95040 1.21909 1.19045 0.91165 1.33118 0.92287 1.25903 0.92777 1.05403 0.93453 1.70645 1.38648 1.00593 1.42169 0.83490 0.76632 0.73713 0.76010 1.21248 1.21353 1.20817 1.89160 1.33168 1.68765 1.38774 0.90577 0.93131 0.94090 0.91049 0.92937 0.93073 0.92877 0.91482 0.90777 0.92257 0.91775 0.91716 0.91987 0.89629 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.32 37.16 0.31 -1.79 16 2 C -0.10 -1.40 2.59 -90.62 -0.23 -1.63 16 3 C -0.15 -1.79 9.19 37.16 0.34 -1.45 16 4 C -0.11 -2.04 4.48 -26.74 -0.12 -2.16 16 5 C 0.25 5.19 1.13 -26.73 -0.03 5.16 16 6 C -0.17 -3.06 8.67 37.16 0.32 -2.74 16 7 O -0.39 -7.93 7.82 -59.04 -0.46 -8.39 16 8 C 0.02 0.54 7.33 38.17 0.28 0.82 16 9 C 0.17 4.42 3.05 -26.88 -0.08 4.34 16 10 H 0.03 0.88 8.08 -51.92 -0.42 0.46 16 11 C -0.62 -17.42 8.83 -34.44 -0.30 -17.73 16 12 H 0.06 1.62 7.78 -52.48 -0.41 1.21 16 13 C 0.03 0.97 5.42 -17.82 -0.10 0.87 16 14 N -0.89 -27.20 13.56 55.43 0.75 -26.45 16 15 Si 1.07 25.05 29.90 -169.99 -5.08 19.96 16 16 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 O -0.38 -9.78 9.44 -59.04 -0.56 -10.34 16 20 H 0.08 1.23 5.86 -51.93 -0.30 0.93 16 21 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 22 H 0.04 0.51 8.13 -51.93 -0.42 0.09 16 23 H 0.07 1.01 5.99 -51.93 -0.31 0.70 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 28 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.01 6.22 -51.92 -0.32 0.68 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 33 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.28 8.73 6.60 -40.82 -0.27 8.46 16 LS Contribution 270.97 15.07 4.08 4.08 Total: -1.00 -30.43 270.97 -6.35 -36.78 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.47 Total: 0.65 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 0.39 Total: -16.29 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.75 Total: -26.45 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.02 Total: -18.73 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.43 -6.35 -36.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258596175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.272 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds