Wall clock time and date at job start Mon Mar 30 2020 02:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 C 1.52993 * 109.47162 * 120.00076 * 2 1 3 5 5 C 1.52996 * 109.47324 * 66.25445 * 4 2 1 6 6 C 1.53003 * 109.50996 * 54.10107 * 5 4 2 7 7 O 1.43752 * 109.63165 * 293.78131 * 5 4 2 8 8 C 1.44789 * 104.81869 * 215.80612 * 7 5 4 9 9 C 1.54910 * 101.71907 * 36.10316 * 8 7 5 10 10 H 1.09007 * 110.84551 * 82.90759 * 9 8 7 11 11 C 1.50696 * 110.69828 * 206.04202 * 9 8 7 12 12 H 1.08008 * 119.99890 * 355.10723 * 11 9 8 13 13 C 1.37880 * 120.00480 * 175.11279 * 11 9 8 14 14 N 1.31515 * 119.99852 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00034 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47140 * 270.00072 * 15 13 11 17 17 H 1.48496 * 109.47202 * 29.99700 * 15 13 11 18 18 H 1.48496 * 109.46914 * 150.00119 * 15 13 11 19 19 O 1.43374 * 109.63730 * 174.42111 * 5 4 2 20 20 H 1.08995 * 109.46706 * 172.12755 * 1 2 3 21 21 H 1.08999 * 109.46598 * 292.12172 * 1 2 3 22 22 H 1.08998 * 109.46973 * 52.12540 * 1 2 3 23 23 H 1.09002 * 109.46766 * 239.99932 * 2 1 3 24 24 H 1.09002 * 109.47099 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47476 * 300.00104 * 3 2 1 26 26 H 1.08998 * 109.47203 * 59.99854 * 3 2 1 27 27 H 1.09001 * 109.47157 * 306.25203 * 4 2 1 28 28 H 1.09010 * 109.47447 * 186.25271 * 4 2 1 29 29 H 1.08991 * 109.47316 * 179.61841 * 6 5 4 30 30 H 1.09007 * 109.46648 * 299.62049 * 6 5 4 31 31 H 1.08999 * 109.46716 * 59.61799 * 6 5 4 32 32 H 1.08996 * 110.97645 * 277.99580 * 8 7 5 33 33 H 1.08993 * 110.97720 * 154.21081 * 8 7 5 34 34 H 0.97003 * 119.99679 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6625 -2.2019 1.1731 6 6 2.1717 -2.7921 -0.1434 7 8 0.2333 -2.3401 1.2435 8 6 0.0157 -3.5567 1.9978 9 6 1.1716 -3.4996 3.0274 10 1 0.9034 -2.8719 3.8773 11 6 1.5437 -4.8854 3.4879 12 1 0.9674 -5.7371 3.1576 13 6 2.6197 -5.0662 4.3309 14 7 3.3216 -4.0292 4.7328 15 14 3.0803 -6.7840 4.9022 16 1 2.3582 -7.0972 6.1615 17 1 2.7045 -7.7704 3.8577 18 1 4.5444 -6.8500 5.1416 19 8 2.2493 -2.9061 2.2756 20 1 -0.3632 -1.0180 -0.1408 21 1 -0.3632 0.3870 0.9520 22 1 -0.3633 0.6309 -0.8112 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.5882 -0.2761 2.1356 28 1 3.1244 -0.6253 1.3069 29 1 1.9084 -3.8485 -0.1940 30 1 1.7144 -2.2632 -0.9797 31 1 3.2552 -2.6850 -0.1945 32 1 0.1063 -4.4342 1.3576 33 1 -0.9530 -3.5382 2.4972 34 1 3.0821 -3.1372 4.4364 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258596175.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:37 Heat of formation + Delta-G solvation = -134.612668 kcal Electronic energy + Delta-G solvation = -15473.528386 eV Core-core repulsion = 12983.940893 eV Total energy + Delta-G solvation = -2489.587493 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.39817 -37.46395 -35.90570 -34.76342 -32.28478 -29.76281 -27.99162 -27.82255 -26.26827 -23.43016 -22.50099 -20.59633 -19.30248 -17.96451 -17.30936 -16.26022 -15.95839 -15.68974 -15.44938 -14.78262 -14.72133 -14.04720 -13.83705 -13.69891 -13.52087 -13.15055 -12.97965 -12.88634 -12.66949 -12.61107 -12.24733 -11.93124 -11.75554 -11.69866 -11.45721 -11.00505 -10.83580 -10.66241 -10.11391 -8.72914 -6.53387 1.52321 1.61723 1.79455 2.51931 2.70629 3.04641 3.37213 3.81429 3.87462 4.05009 4.09030 4.21812 4.28914 4.37481 4.50536 4.54251 4.65288 4.74070 4.84568 4.86956 4.93267 4.99585 5.05357 5.18574 5.21280 5.24550 5.29803 5.49076 5.61500 5.84439 6.02352 6.44532 6.57193 7.40300 8.68069 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054399 B = 0.008282 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.590281 B = 3380.077332 C = 3560.145651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.110 4.110 5 C 0.235 3.765 6 C -0.160 4.160 7 O -0.376 6.376 8 C 0.035 3.965 9 C 0.160 3.840 10 H 0.003 0.997 11 C -0.629 4.629 12 H 0.064 0.936 13 C -0.019 4.019 14 N -0.915 5.915 15 Si 1.124 2.876 16 H -0.267 1.267 17 H -0.268 1.268 18 H -0.284 1.284 19 O -0.408 6.408 20 H 0.059 0.941 21 H 0.039 0.961 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 5.603 -9.682 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.148 4.148 5 C 0.158 3.842 6 C -0.218 4.218 7 O -0.297 6.297 8 C -0.041 4.041 9 C 0.105 3.895 10 H 0.020 0.980 11 C -0.666 4.666 12 H 0.082 0.918 13 C -0.221 4.221 14 N -0.551 5.551 15 Si 0.944 3.056 16 H -0.192 1.192 17 H -0.192 1.192 18 H -0.210 1.210 19 O -0.330 6.330 20 H 0.078 0.922 21 H 0.058 0.942 22 H 0.086 0.914 23 H 0.101 0.899 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.019 4.931 -8.820 10.546 hybrid contribution -1.048 0.850 -0.518 1.445 sum -4.067 5.781 -9.338 11.711 Atomic orbital electron populations 1.21869 0.94628 1.02246 1.01056 1.21155 0.96622 0.96657 0.96420 1.21812 1.01055 0.94739 1.02301 1.21959 1.01056 0.92225 0.99572 1.23550 0.78458 0.93275 0.88902 1.22346 1.01970 1.00971 0.96477 1.89137 1.22588 1.42742 1.75270 1.24245 0.99925 0.87475 0.92461 1.21313 0.84565 0.93334 0.90268 0.97988 1.22301 1.18922 0.92318 1.33078 0.91762 1.27504 0.92770 1.08463 0.93378 1.70783 1.40030 1.00407 1.43839 0.82879 0.76392 0.69467 0.76891 1.19232 1.19247 1.20995 1.89080 1.33952 1.69633 1.40370 0.92228 0.94217 0.91425 0.89936 0.92465 0.90808 0.93174 0.93182 0.91044 0.93500 0.88634 0.91337 0.91588 0.87432 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.32 71.98 0.60 -3.18 16 2 C -0.09 -2.42 2.59 -10.79 -0.03 -2.45 16 3 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16 4 C -0.11 -3.91 4.48 30.59 0.14 -3.77 16 5 C 0.24 9.71 1.13 30.59 0.03 9.74 16 6 C -0.16 -5.66 8.67 71.98 0.62 -5.03 16 7 O -0.38 -15.21 7.82 -126.22 -0.99 -16.20 16 8 C 0.04 1.52 7.33 72.63 0.53 2.05 16 9 C 0.16 8.58 3.05 30.50 0.09 8.67 16 10 H 0.00 0.15 8.08 -2.38 -0.02 0.13 16 11 C -0.63 -36.00 8.83 25.60 0.23 -35.78 16 12 H 0.06 3.51 7.78 -2.91 -0.02 3.49 16 13 C -0.02 -1.13 5.42 84.66 0.46 -0.67 16 14 N -0.92 -57.66 13.56 21.45 0.29 -57.37 16 15 Si 1.12 50.05 29.90 68.60 2.05 52.10 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 O -0.41 -21.70 9.44 -126.22 -1.19 -22.89 16 20 H 0.06 1.80 5.86 -2.39 -0.01 1.78 16 21 H 0.04 1.13 8.11 -2.39 -0.02 1.11 16 22 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 23 H 0.08 2.05 5.99 -2.39 -0.01 2.04 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.91 8.12 -2.39 -0.02 1.89 16 28 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 2.74 6.22 -2.38 -0.01 2.72 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.80 8.04 -2.39 -0.02 2.78 16 33 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 34 H 0.26 17.10 6.60 -92.71 -0.61 16.49 16 Total: -1.00 -66.36 270.97 4.71 -61.64 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 1.21 Total: 15.58 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 3.34 Total: -32.86 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.29 Total: -57.37 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -2.18 Total: -39.09 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -66.36 4.71 -61.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258596175.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.971 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds