Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47462 * 2 1 4 4 C 1.53009 * 109.47024 * 120.00147 * 2 1 3 5 5 C 1.53002 * 109.46889 * 66.71271 * 4 2 1 6 6 C 1.52994 * 109.62637 * 173.56725 * 5 4 2 7 7 O 1.43756 * 109.63026 * 293.95468 * 5 4 2 8 8 C 1.44780 * 104.81562 * 144.19800 * 7 5 4 9 9 C 1.54925 * 101.72024 * 323.89546 * 8 7 5 10 10 H 1.09004 * 110.69202 * 277.16497 * 9 8 7 11 11 C 1.50698 * 110.69551 * 154.13316 * 9 8 7 12 12 H 1.07999 * 120.00184 * 359.97438 * 11 9 8 13 13 C 1.37875 * 119.99941 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00048 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 119.99865 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47360 * 60.00736 * 15 13 11 17 17 H 1.48505 * 109.47200 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47540 * 300.00241 * 15 13 11 19 19 O 1.43364 * 109.63695 * 53.31970 * 5 4 2 20 20 H 1.08997 * 109.47340 * 171.51708 * 1 2 3 21 21 H 1.09001 * 109.47120 * 291.52194 * 1 2 3 22 22 H 1.09005 * 109.46979 * 51.52067 * 1 2 3 23 23 H 1.08999 * 109.47317 * 239.99666 * 2 1 3 24 24 H 1.09001 * 109.47217 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47057 * 299.99831 * 3 2 1 26 26 H 1.09002 * 109.46771 * 59.99917 * 3 2 1 27 27 H 1.09002 * 109.46492 * 306.71446 * 4 2 1 28 28 H 1.09000 * 109.46959 * 186.70889 * 4 2 1 29 29 H 1.09000 * 109.47643 * 64.95511 * 6 5 4 30 30 H 1.08997 * 109.47358 * 184.95909 * 6 5 4 31 31 H 1.09009 * 109.47071 * 304.95440 * 6 5 4 32 32 H 1.08996 * 110.98659 * 82.00297 * 8 7 5 33 33 H 1.09001 * 110.97759 * 205.79067 * 8 7 5 34 34 H 0.96998 * 120.00357 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6723 -2.2043 1.1677 6 6 2.3165 -2.9583 2.3327 7 8 0.2436 -2.3516 1.2282 8 6 -0.0518 -3.4614 0.3466 9 6 0.9902 -3.2536 -0.7809 10 1 0.6328 -2.5222 -1.5057 11 6 1.3088 -4.5610 -1.4592 12 1 0.8255 -5.4703 -1.1334 13 6 2.2173 -4.5965 -2.4956 14 7 2.8063 -3.4894 -2.8920 15 14 2.6127 -6.2172 -3.3359 16 1 1.3735 -6.7843 -3.9258 17 1 3.6122 -5.9871 -4.4100 18 1 3.1674 -7.1689 -2.3400 19 8 2.1406 -2.7492 -0.0728 20 1 -0.3634 -1.0164 -0.1516 21 1 -0.3633 0.3770 0.9560 22 1 -0.3633 0.6395 -0.8045 23 1 1.8933 -0.5139 -0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9562 -0.8899 26 1 1.6767 1.9562 0.8900 27 1 1.5818 -0.2815 2.1352 28 1 3.1233 -0.6185 1.3114 29 1 1.8904 -2.6075 3.2727 30 1 2.1266 -4.0260 2.2238 31 1 3.3917 -2.7785 2.3317 32 1 0.1051 -4.4141 0.8522 33 1 -1.0674 -3.3907 -0.0429 34 1 3.4457 -3.5144 -3.6210 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258596178.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = -128.398093 kcal Electronic energy + Delta-G solvation = -15691.073797 eV Core-core repulsion = 13201.755788 eV Total energy + Delta-G solvation = -2489.318009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.29583 -36.76415 -35.67042 -34.61505 -32.73903 -29.81089 -27.94841 -27.56517 -26.57147 -23.03464 -21.97423 -20.78247 -18.83572 -18.10928 -16.90498 -16.64222 -15.99287 -15.55086 -15.03690 -14.47294 -14.34832 -14.06325 -13.82403 -13.63168 -13.37458 -13.02023 -12.95047 -12.77392 -12.68017 -12.48807 -12.34939 -12.20534 -11.87001 -11.60014 -11.41950 -11.14973 -10.77107 -10.43247 -9.93061 -8.20563 -6.43193 1.40469 1.42984 1.50715 2.37587 2.84308 3.10593 3.61818 3.88498 4.03724 4.16554 4.30556 4.33540 4.46883 4.53936 4.63892 4.75968 4.77890 4.85009 4.89052 4.93779 5.01840 5.06348 5.13852 5.24557 5.31532 5.41036 5.45959 5.63301 5.64181 5.70479 6.10111 6.59766 6.91102 7.33548 8.87312 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.035100 B = 0.010418 C = 0.009458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.535610 B = 2687.112690 C = 2959.678724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.105 4.105 5 C 0.229 3.771 6 C -0.161 4.161 7 O -0.382 6.382 8 C 0.028 3.972 9 C 0.189 3.811 10 H 0.011 0.989 11 C -0.562 4.562 12 H 0.070 0.930 13 C 0.027 3.973 14 N -0.899 5.899 15 Si 0.964 3.036 16 H -0.262 1.262 17 H -0.283 1.283 18 H -0.270 1.270 19 O -0.388 6.388 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 4.698 7.218 8.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 C -0.192 4.192 4 C -0.143 4.143 5 C 0.152 3.848 6 C -0.219 4.219 7 O -0.303 6.303 8 C -0.048 4.048 9 C 0.134 3.866 10 H 0.029 0.971 11 C -0.599 4.599 12 H 0.088 0.912 13 C -0.176 4.176 14 N -0.536 5.536 15 Si 0.788 3.212 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.195 1.195 19 O -0.310 6.310 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.357 4.915 7.160 8.999 hybrid contribution 0.355 -0.949 -0.755 1.263 sum -2.001 3.966 6.405 7.795 Atomic orbital electron populations 1.21896 0.94834 1.01789 1.01023 1.20966 0.96525 0.96561 0.97480 1.21752 1.00671 0.94607 1.02158 1.21916 1.01155 0.92245 0.98987 1.23575 0.79454 0.94490 0.87303 1.22301 1.01442 1.00241 0.97882 1.89066 1.22771 1.51370 1.67102 1.24333 1.00743 0.89569 0.90136 1.21017 0.82380 0.93344 0.89901 0.97100 1.21403 1.27219 0.94194 1.17081 0.91236 1.25936 0.94816 1.00002 0.96827 1.70154 1.27065 1.28988 1.27393 0.85544 0.78411 0.79283 0.77986 1.18661 1.20818 1.19502 1.89128 1.33586 1.78431 1.29890 0.93054 0.92047 0.93524 0.94316 0.92948 0.92702 0.91183 0.89311 0.90840 0.89531 0.93439 0.91180 0.91865 0.87702 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 8.32 71.98 0.60 -4.18 16 2 C -0.10 -3.52 2.79 -10.79 -0.03 -3.56 16 3 C -0.13 -3.84 9.18 71.98 0.66 -3.18 16 4 C -0.11 -3.70 4.31 30.60 0.13 -3.57 16 5 C 0.23 9.39 1.04 30.59 0.03 9.42 16 6 C -0.16 -5.67 9.19 71.98 0.66 -5.01 16 7 O -0.38 -15.39 8.27 -126.22 -1.04 -16.43 16 8 C 0.03 1.21 6.76 72.64 0.49 1.70 16 9 C 0.19 9.86 2.98 30.51 0.09 9.95 16 10 H 0.01 0.65 7.78 -2.39 -0.02 0.63 16 11 C -0.56 -31.36 8.82 25.60 0.23 -31.14 16 12 H 0.07 3.68 7.76 -2.91 -0.02 3.66 16 13 C 0.03 1.53 5.45 84.65 0.46 1.99 16 14 N -0.90 -53.88 13.15 21.45 0.28 -53.60 16 15 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 16 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 O -0.39 -20.27 9.33 -126.22 -1.18 -21.45 16 20 H 0.05 2.02 4.60 -2.39 -0.01 2.01 16 21 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 22 H 0.05 1.48 8.13 -2.38 -0.02 1.46 16 23 H 0.04 1.80 7.29 -2.39 -0.02 1.78 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 2.64 8.10 -2.39 -0.02 2.62 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.06 2.63 8.02 -2.39 -0.02 2.61 16 33 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -63.15 273.66 4.46 -58.69 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.05 Total: 14.90 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 3.32 Total: -27.57 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.28 Total: -53.60 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -2.22 Total: -37.88 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -63.15 4.46 -58.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258596178.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.704 kcal (2) G-P(sol) polarization free energy of solvation -63.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds