Wall clock time and date at job start Mon Mar 30 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 C 1.52993 * 109.47306 * 120.00038 * 2 1 3 5 5 C 1.53002 * 109.47324 * 66.28957 * 4 2 1 6 6 C 1.52998 * 109.62760 * 54.75061 * 5 4 2 7 7 O 1.43369 * 109.62917 * 294.36218 * 5 4 2 8 8 C 1.44193 * 107.28918 * 239.44969 * 7 5 4 9 9 C 1.54918 * 103.07382 * 338.56530 * 8 7 5 10 10 H 1.09005 * 110.97492 * 277.41184 * 9 8 7 11 11 C 1.50700 * 110.97946 * 153.66920 * 9 8 7 12 12 H 1.07994 * 119.99916 * 3.11270 * 11 9 8 13 13 C 1.37876 * 119.99907 * 183.10541 * 11 9 8 14 14 N 1.31508 * 120.00307 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99887 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47280 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47281 * 240.00423 * 15 13 11 18 18 H 1.48495 * 109.47330 * 120.00243 * 15 13 11 19 19 O 1.43785 * 109.65244 * 174.96196 * 5 4 2 20 20 H 1.09000 * 109.47191 * 51.85853 * 1 2 3 21 21 H 1.09003 * 109.46571 * 171.85920 * 1 2 3 22 22 H 1.09000 * 109.46594 * 291.85836 * 1 2 3 23 23 H 1.08993 * 109.46938 * 240.00601 * 2 1 3 24 24 H 1.08998 * 109.47014 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.46823 * 300.00500 * 3 2 1 26 26 H 1.09002 * 109.46965 * 59.99913 * 3 2 1 27 27 H 1.09000 * 109.47276 * 306.28905 * 4 2 1 28 28 H 1.08999 * 109.47123 * 186.28994 * 4 2 1 29 29 H 1.09002 * 109.47331 * 300.31324 * 6 5 4 30 30 H 1.08998 * 109.47272 * 60.31067 * 6 5 4 31 31 H 1.08996 * 109.47412 * 180.31255 * 6 5 4 32 32 H 1.09001 * 110.69813 * 220.17271 * 8 7 5 33 33 H 1.08995 * 110.84660 * 97.02390 * 8 7 5 34 34 H 0.97003 * 119.99847 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6633 -2.2021 1.1727 6 6 2.1861 -2.7986 -0.1356 7 8 0.2373 -2.3398 1.2289 8 6 -0.0699 -3.1508 2.3808 9 6 1.2571 -3.9067 2.6412 10 1 1.3401 -4.7823 1.9972 11 6 1.3818 -4.2939 4.0922 12 1 0.5761 -4.0807 4.7791 13 6 2.5243 -4.9204 4.5428 14 7 3.5055 -5.1797 3.7064 15 14 2.6786 -5.4010 6.3413 16 1 1.4463 -5.0022 7.0678 17 1 3.8507 -4.7124 6.9390 18 1 2.8611 -6.8709 6.4471 19 8 2.2412 -2.9062 2.2852 20 1 -0.3633 0.6347 -0.8082 21 1 -0.3632 -1.0174 -0.1455 22 1 -0.3632 0.3826 0.9538 23 1 1.8934 -0.5137 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.5878 -0.2765 2.1356 28 1 3.1243 -0.6247 1.3072 29 1 1.7478 -2.2649 -0.9790 30 1 3.2714 -2.7038 -0.1701 31 1 1.9115 -3.8520 -0.1901 32 1 -0.8742 -3.8511 2.1555 33 1 -0.3319 -2.5272 3.2355 34 1 3.4252 -4.9305 2.7724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258596182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:41 Heat of formation + Delta-G solvation = -116.715091 kcal Electronic energy + Delta-G solvation = -15459.809400 eV Core-core repulsion = 12970.998004 eV Total energy + Delta-G solvation = -2488.811396 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.65783 -36.06504 -34.04704 -32.79990 -30.68713 -27.85847 -26.86643 -26.45647 -24.27612 -21.49084 -21.03063 -19.14810 -17.24222 -16.22901 -15.57161 -14.89515 -14.06458 -13.85697 -13.69589 -13.38698 -13.18627 -12.89911 -12.37440 -12.02838 -11.95326 -11.63507 -11.41439 -11.31692 -11.08659 -10.79475 -10.61190 -10.53991 -10.34322 -10.17266 -10.10416 -9.09940 -8.86862 -8.63060 -8.32209 -6.49322 -4.29139 3.39377 3.43562 3.56802 4.35616 4.48581 4.75858 5.13186 5.22306 5.27168 5.51247 5.64025 5.67525 5.85282 5.86931 5.93781 5.99030 6.07866 6.10892 6.12719 6.24588 6.28381 6.32871 6.43199 6.51008 6.58670 6.68566 6.84420 6.87337 7.18345 7.93504 8.21042 8.36684 8.72661 9.53393 10.92209 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049508 B = 0.008210 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.427777 B = 3409.661495 C = 3481.826513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.112 4.112 5 C 0.246 3.754 6 C -0.168 4.168 7 O -0.390 6.390 8 C 0.029 3.971 9 C 0.166 3.834 10 H 0.032 0.968 11 C -0.609 4.609 12 H 0.062 0.938 13 C 0.033 3.967 14 N -0.887 5.887 15 Si 1.078 2.922 16 H -0.287 1.287 17 H -0.285 1.285 18 H -0.285 1.285 19 O -0.371 6.371 20 H 0.039 0.961 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 7.686 -6.209 10.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.150 4.150 5 C 0.168 3.832 6 C -0.226 4.226 7 O -0.312 6.312 8 C -0.047 4.047 9 C 0.111 3.889 10 H 0.049 0.951 11 C -0.646 4.646 12 H 0.080 0.920 13 C -0.176 4.176 14 N -0.521 5.521 15 Si 0.906 3.094 16 H -0.213 1.213 17 H -0.211 1.211 18 H -0.211 1.211 19 O -0.293 6.293 20 H 0.058 0.942 21 H 0.095 0.905 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.817 7.105 -5.174 9.230 hybrid contribution -1.038 0.652 -1.096 1.644 sum -3.855 7.757 -6.269 10.693 Atomic orbital electron populations 1.21911 0.94755 1.02804 1.00517 1.21138 0.96623 0.95418 0.98114 1.21844 1.00691 0.96400 1.01316 1.21878 1.01154 0.93739 0.98190 1.23078 0.78909 0.92169 0.88999 1.22410 1.01406 1.01386 0.97373 1.88747 1.22377 1.72410 1.47686 1.24169 0.99727 0.93225 0.87627 1.21593 0.82330 0.87330 0.97623 0.95090 1.21829 1.06483 1.43438 0.92805 0.92008 1.25953 0.92027 0.93108 1.06509 1.70629 1.32514 1.42642 1.06306 0.83429 0.75732 0.76622 0.73666 1.21321 1.21087 1.21097 1.89554 1.43459 1.49237 1.47031 0.94165 0.90528 0.93177 0.91088 0.92953 0.93048 0.92880 0.91388 0.91038 0.91747 0.91504 0.92442 0.90526 0.91888 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.32 37.16 0.31 -1.77 16 2 C -0.09 -1.38 2.61 -90.62 -0.24 -1.61 16 3 C -0.15 -1.78 9.19 37.16 0.34 -1.44 16 4 C -0.11 -2.01 4.49 -26.73 -0.12 -2.13 16 5 C 0.25 5.12 1.13 -26.73 -0.03 5.09 16 6 C -0.17 -3.08 8.71 37.16 0.32 -2.76 16 7 O -0.39 -8.07 7.65 -59.03 -0.45 -8.52 16 8 C 0.03 0.63 7.52 38.17 0.29 0.92 16 9 C 0.17 4.32 2.77 -26.87 -0.07 4.25 16 10 H 0.03 0.85 8.01 -51.93 -0.42 0.44 16 11 C -0.61 -17.24 8.84 -34.44 -0.30 -17.54 16 12 H 0.06 1.71 7.78 -52.49 -0.41 1.30 16 13 C 0.03 0.94 5.44 -17.82 -0.10 0.84 16 14 N -0.89 -27.04 13.60 55.43 0.75 -26.28 16 15 Si 1.08 25.02 29.90 -169.99 -5.08 19.94 16 16 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 O -0.37 -9.64 9.86 -59.03 -0.58 -10.22 16 20 H 0.04 0.50 8.13 -51.93 -0.42 0.08 16 21 H 0.08 1.24 5.86 -51.93 -0.30 0.94 16 22 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 23 H 0.07 1.00 5.99 -51.93 -0.31 0.69 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.01 6.20 -51.93 -0.32 0.69 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.06 1.40 8.02 -51.93 -0.42 0.98 16 34 H 0.28 8.60 6.71 -40.82 -0.27 8.33 16 LS Contribution 271.24 15.07 4.09 4.09 Total: -1.00 -30.28 271.24 -6.35 -36.63 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.47 Total: 0.53 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 0.40 Total: -16.15 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.75 Total: -26.28 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.03 Total: -18.74 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.28 -6.35 -36.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258596182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.089 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds