Wall clock time and date at job start Mon Mar 30 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46975 * 2 1 4 4 C 1.52993 * 109.47306 * 120.00038 * 2 1 3 5 5 C 1.53002 * 109.47324 * 66.28957 * 4 2 1 6 6 C 1.52998 * 109.62760 * 54.75061 * 5 4 2 7 7 O 1.43369 * 109.62917 * 294.36218 * 5 4 2 8 8 C 1.44193 * 107.28918 * 239.44969 * 7 5 4 9 9 C 1.54918 * 103.07382 * 338.56530 * 8 7 5 10 10 H 1.09005 * 110.97492 * 277.41184 * 9 8 7 11 11 C 1.50700 * 110.97946 * 153.66920 * 9 8 7 12 12 H 1.07994 * 119.99916 * 3.11270 * 11 9 8 13 13 C 1.37876 * 119.99907 * 183.10541 * 11 9 8 14 14 N 1.31508 * 120.00307 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99887 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47280 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47281 * 240.00423 * 15 13 11 18 18 H 1.48495 * 109.47330 * 120.00243 * 15 13 11 19 19 O 1.43785 * 109.65244 * 174.96196 * 5 4 2 20 20 H 1.09000 * 109.47191 * 51.85853 * 1 2 3 21 21 H 1.09003 * 109.46571 * 171.85920 * 1 2 3 22 22 H 1.09000 * 109.46594 * 291.85836 * 1 2 3 23 23 H 1.08993 * 109.46938 * 240.00601 * 2 1 3 24 24 H 1.08998 * 109.47014 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.46823 * 300.00500 * 3 2 1 26 26 H 1.09002 * 109.46965 * 59.99913 * 3 2 1 27 27 H 1.09000 * 109.47276 * 306.28905 * 4 2 1 28 28 H 1.08999 * 109.47123 * 186.28994 * 4 2 1 29 29 H 1.09002 * 109.47331 * 300.31324 * 6 5 4 30 30 H 1.08998 * 109.47272 * 60.31067 * 6 5 4 31 31 H 1.08996 * 109.47412 * 180.31255 * 6 5 4 32 32 H 1.09001 * 110.69813 * 220.17271 * 8 7 5 33 33 H 1.08995 * 110.84660 * 97.02390 * 8 7 5 34 34 H 0.97003 * 119.99847 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6633 -2.2021 1.1727 6 6 2.1861 -2.7986 -0.1356 7 8 0.2373 -2.3398 1.2289 8 6 -0.0699 -3.1508 2.3808 9 6 1.2571 -3.9067 2.6412 10 1 1.3401 -4.7823 1.9972 11 6 1.3818 -4.2939 4.0922 12 1 0.5761 -4.0807 4.7791 13 6 2.5243 -4.9204 4.5428 14 7 3.5055 -5.1797 3.7064 15 14 2.6786 -5.4010 6.3413 16 1 1.4463 -5.0022 7.0678 17 1 3.8507 -4.7124 6.9390 18 1 2.8611 -6.8709 6.4471 19 8 2.2412 -2.9062 2.2852 20 1 -0.3633 0.6347 -0.8082 21 1 -0.3632 -1.0174 -0.1455 22 1 -0.3632 0.3826 0.9538 23 1 1.8934 -0.5137 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.5878 -0.2765 2.1356 28 1 3.1243 -0.6247 1.3072 29 1 1.7478 -2.2649 -0.9790 30 1 3.2714 -2.7038 -0.1701 31 1 1.9115 -3.8520 -0.1901 32 1 -0.8742 -3.8511 2.1555 33 1 -0.3319 -2.5272 3.2355 34 1 3.4252 -4.9305 2.7724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258596182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:41 Heat of formation + Delta-G solvation = -135.107677 kcal Electronic energy + Delta-G solvation = -15460.606962 eV Core-core repulsion = 12970.998004 eV Total energy + Delta-G solvation = -2489.608958 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.40691 -37.45708 -35.89189 -34.82632 -32.32836 -29.73688 -28.01329 -27.82052 -26.31947 -23.45364 -22.50440 -20.56717 -19.29344 -18.05014 -17.22164 -16.39924 -15.80152 -15.70152 -15.39559 -14.90531 -14.63709 -14.47265 -13.89899 -13.63664 -13.44495 -13.15967 -12.98258 -12.77004 -12.67426 -12.60363 -12.30332 -11.92174 -11.73354 -11.70082 -11.40811 -11.03737 -10.79333 -10.64365 -10.25175 -8.76672 -6.57193 1.52083 1.61380 1.78249 2.49554 2.67858 3.01795 3.36865 3.80923 3.90644 4.05642 4.09588 4.17406 4.29882 4.35622 4.47300 4.55726 4.65243 4.73105 4.85415 4.87811 4.91681 4.98976 5.06343 5.15541 5.20824 5.23941 5.30173 5.49987 5.62806 5.82131 6.00853 6.41122 6.50865 7.34897 8.64257 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.049508 B = 0.008210 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.427777 B = 3409.661495 C = 3481.826513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.141 4.141 4 C -0.108 4.108 5 C 0.233 3.767 6 C -0.163 4.163 7 O -0.381 6.381 8 C 0.038 3.962 9 C 0.159 3.841 10 H 0.008 0.992 11 C -0.626 4.626 12 H 0.064 0.936 13 C -0.019 4.019 14 N -0.914 5.914 15 Si 1.126 2.874 16 H -0.266 1.266 17 H -0.281 1.281 18 H -0.273 1.273 19 O -0.403 6.403 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.507 8.831 -6.524 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.199 4.199 4 C -0.146 4.146 5 C 0.156 3.844 6 C -0.220 4.220 7 O -0.303 6.303 8 C -0.038 4.038 9 C 0.104 3.896 10 H 0.026 0.974 11 C -0.662 4.662 12 H 0.083 0.917 13 C -0.220 4.220 14 N -0.549 5.549 15 Si 0.947 3.053 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.198 1.198 19 O -0.325 6.325 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.059 0.941 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.456 8.265 -5.512 10.518 hybrid contribution -0.876 0.343 -1.074 1.428 sum -4.332 8.608 -6.587 11.672 Atomic orbital electron populations 1.21866 0.94619 1.02125 1.01056 1.21137 0.96642 0.96666 0.96329 1.21810 1.01047 0.94652 1.02345 1.21897 1.01069 0.91949 0.99668 1.23561 0.78696 0.93594 0.88565 1.22377 1.01794 1.00684 0.97142 1.88765 1.22388 1.72121 1.47005 1.24044 0.98341 0.93249 0.88192 1.21478 0.84511 0.87359 0.96263 0.97428 1.22220 1.06591 1.43363 0.94055 0.91740 1.27530 0.91661 0.92616 1.10241 1.70766 1.33690 1.44617 1.05834 0.82838 0.76661 0.77035 0.68805 1.19083 1.20666 1.19832 1.89471 1.44335 1.49477 1.49207 0.91558 0.92340 0.94086 0.90151 0.92458 0.90862 0.93028 0.92800 0.91192 0.88656 0.91105 0.93948 0.88294 0.92027 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.32 71.98 0.60 -3.13 16 2 C -0.09 -2.39 2.61 -10.79 -0.03 -2.41 16 3 C -0.14 -3.04 9.19 71.98 0.66 -2.38 16 4 C -0.11 -3.78 4.49 30.59 0.14 -3.65 16 5 C 0.23 9.63 1.13 30.59 0.03 9.66 16 6 C -0.16 -5.84 8.71 71.98 0.63 -5.21 16 7 O -0.38 -15.50 7.65 -126.22 -0.97 -16.47 16 8 C 0.04 1.67 7.52 72.64 0.55 2.21 16 9 C 0.16 8.45 2.77 30.50 0.08 8.54 16 10 H 0.01 0.46 8.01 -2.38 -0.02 0.44 16 11 C -0.63 -35.86 8.84 25.60 0.23 -35.64 16 12 H 0.06 3.56 7.78 -2.91 -0.02 3.54 16 13 C -0.02 -1.08 5.44 84.66 0.46 -0.62 16 14 N -0.91 -56.98 13.60 21.45 0.29 -56.68 16 15 Si 1.13 50.02 29.90 68.60 2.05 52.07 16 16 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 O -0.40 -21.37 9.86 -126.22 -1.24 -22.62 16 20 H 0.07 1.42 8.13 -2.39 -0.02 1.41 16 21 H 0.06 1.78 5.86 -2.39 -0.01 1.76 16 22 H 0.04 1.15 8.11 -2.39 -0.02 1.13 16 23 H 0.08 2.01 5.99 -2.39 -0.01 2.00 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.09 2.79 6.20 -2.39 -0.01 2.78 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 33 H 0.06 2.71 8.02 -2.39 -0.02 2.69 16 34 H 0.26 16.84 6.71 -92.71 -0.62 16.21 16 Total: -1.00 -65.66 271.24 4.68 -60.98 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 1.20 Total: 15.35 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 3.35 Total: -32.63 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.29 Total: -56.68 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -2.21 Total: -39.09 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.07 kcal Total: -65.66 4.68 -60.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258596182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.133 kcal (2) G-P(sol) polarization free energy of solvation -65.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds