Wall clock time and date at job start Mon Mar 30 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47324 * 2 1 4 4 C 1.53004 * 109.47360 * 119.99828 * 2 1 3 5 5 C 1.53000 * 109.47305 * 173.85092 * 4 2 1 6 6 C 1.52995 * 109.62458 * 305.60074 * 5 4 2 7 7 O 1.43362 * 109.51261 * 65.92095 * 5 4 2 8 8 C 1.44197 * 107.28991 * 120.47462 * 7 5 4 9 9 C 1.54917 * 103.07525 * 21.43594 * 8 7 5 10 10 H 1.08996 * 110.97820 * 82.54718 * 9 8 7 11 11 C 1.50700 * 111.00818 * 206.31648 * 9 8 7 12 12 H 1.07998 * 120.00335 * 353.81192 * 11 9 8 13 13 C 1.37877 * 119.99469 * 173.80691 * 11 9 8 14 14 N 1.31511 * 120.00684 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 119.99699 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47107 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47290 * 120.00061 * 15 13 11 18 18 H 1.48504 * 109.47149 * 240.00210 * 15 13 11 19 19 O 1.43756 * 109.62842 * 185.21027 * 5 4 2 20 20 H 1.09006 * 109.47061 * 300.00249 * 1 2 3 21 21 H 1.08998 * 109.47336 * 59.99911 * 1 2 3 22 22 H 1.09000 * 109.47497 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47488 * 239.99911 * 2 1 3 24 24 H 1.08998 * 109.47000 * 68.37315 * 3 2 1 25 25 H 1.09002 * 109.46738 * 188.37577 * 3 2 1 26 26 H 1.08999 * 109.46513 * 308.37266 * 3 2 1 27 27 H 1.08994 * 109.47301 * 53.84493 * 4 2 1 28 28 H 1.09009 * 109.46658 * 293.84756 * 4 2 1 29 29 H 1.09002 * 109.47883 * 300.30958 * 6 5 4 30 30 H 1.08999 * 109.46773 * 180.31061 * 6 5 4 31 31 H 1.09001 * 109.47146 * 60.31652 * 6 5 4 32 32 H 1.09006 * 110.69618 * 263.04149 * 8 7 5 33 33 H 1.08992 * 110.69591 * 139.83370 * 8 7 5 34 34 H 0.96998 * 120.00575 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5622 -0.8564 1.1744 6 6 3.9535 -1.5384 -0.1380 7 8 4.1622 0.4440 1.2391 8 6 5.0258 0.4606 2.3937 9 6 5.3012 -1.0428 2.6470 10 1 6.1017 -1.4068 2.0030 11 6 5.6218 -1.2964 4.0974 12 1 5.7336 -0.4661 4.7790 13 6 5.7724 -2.5885 4.5544 14 7 5.6367 -3.5996 3.7244 15 14 6.1706 -2.9029 6.3522 16 1 6.2725 -1.6072 7.0705 17 1 5.0937 -3.7240 6.9615 18 1 7.4629 -3.6274 6.4536 19 8 4.0326 -1.6392 2.2846 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8040 1.9113 0.9553 25 1 3.1197 1.4461 -0.1497 26 1 1.5596 1.9977 -0.8057 27 1 1.5896 -1.7121 1.3062 28 1 1.7693 -0.1476 2.1359 29 1 3.4952 -2.5263 -0.1850 30 1 5.0379 -1.6384 -0.1862 31 1 3.6065 -0.9365 -0.9779 32 1 4.5183 0.9085 3.2481 33 1 5.9527 0.9902 2.1738 34 1 5.7430 -4.5086 4.0458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258596185.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:42 Heat of formation + Delta-G solvation = -110.360569 kcal Electronic energy + Delta-G solvation = -15419.310002 eV Core-core repulsion = 12930.774158 eV Total energy + Delta-G solvation = -2488.535843 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.46965 -35.93286 -33.77124 -32.64906 -30.67424 -27.92710 -26.80076 -26.33947 -24.66139 -21.17012 -20.90654 -18.97206 -16.86107 -15.94971 -15.46404 -14.77417 -14.57650 -13.87245 -13.45226 -13.20925 -13.02247 -12.55905 -12.20302 -12.09052 -11.90068 -11.52960 -11.26685 -11.18496 -11.02662 -10.91806 -10.53508 -10.45279 -10.44720 -10.09240 -10.00780 -9.26483 -8.85653 -8.66083 -8.22124 -6.12100 -4.26642 3.25113 3.33001 3.36676 4.33188 4.55829 4.88443 5.20841 5.26919 5.30504 5.62115 5.76398 5.79974 5.94193 5.96151 6.03642 6.14433 6.17986 6.21459 6.26517 6.36392 6.40510 6.43957 6.54579 6.64970 6.72672 6.83618 6.95401 7.03400 7.42386 7.77568 8.11120 8.49311 8.83658 9.44859 10.95828 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048921 B = 0.008236 C = 0.008037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.215576 B = 3398.925967 C = 3483.256246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.142 4.142 4 C -0.112 4.112 5 C 0.244 3.756 6 C -0.165 4.165 7 O -0.393 6.393 8 C 0.020 3.980 9 C 0.186 3.814 10 H 0.037 0.963 11 C -0.536 4.536 12 H 0.069 0.931 13 C 0.078 3.922 14 N -0.860 5.860 15 Si 0.897 3.103 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.282 1.282 19 O -0.352 6.352 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 5.606 -6.158 10.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.199 4.199 4 C -0.149 4.149 5 C 0.166 3.834 6 C -0.223 4.223 7 O -0.315 6.315 8 C -0.056 4.056 9 C 0.131 3.869 10 H 0.054 0.946 11 C -0.574 4.574 12 H 0.087 0.913 13 C -0.128 4.128 14 N -0.496 5.496 15 Si 0.724 3.276 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.207 1.207 19 O -0.272 6.272 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.812 5.387 -6.226 10.078 hybrid contribution 0.293 -0.330 0.993 1.086 sum -5.520 5.057 -5.233 9.134 Atomic orbital electron populations 1.21844 0.95893 1.01284 1.01219 1.21138 0.94809 0.97091 0.98277 1.21902 1.02607 0.94968 1.00432 1.21878 0.94312 1.00785 0.97967 1.23093 0.91613 0.79193 0.89550 1.22372 1.02215 1.00489 0.97192 1.88736 1.62170 1.32973 1.47599 1.24314 0.92971 1.00734 0.87585 1.21390 0.83502 0.85020 0.96988 0.94561 1.20912 1.50292 0.92936 0.93213 0.91313 1.25078 0.93605 0.96127 0.98031 1.70043 1.46078 0.98800 1.34672 0.86470 0.78008 0.78509 0.84616 1.19484 1.20718 1.20744 1.89585 1.38020 1.53219 1.46397 0.92932 0.93147 0.92997 0.91104 0.93202 0.90499 0.94302 0.91117 0.91505 0.91640 0.92379 0.92136 0.92105 0.90652 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.18 37.15 0.34 -1.47 16 2 C -0.09 -1.41 2.60 -90.62 -0.24 -1.64 16 3 C -0.14 -2.10 8.30 37.16 0.31 -1.79 16 4 C -0.11 -2.04 4.49 -26.73 -0.12 -2.16 16 5 C 0.24 5.16 1.13 -26.73 -0.03 5.13 16 6 C -0.17 -3.12 8.69 37.16 0.32 -2.80 16 7 O -0.39 -8.19 7.65 -59.04 -0.45 -8.64 16 8 C 0.02 0.44 7.52 38.17 0.29 0.73 16 9 C 0.19 4.86 3.31 -26.87 -0.09 4.77 16 10 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 11 C -0.54 -14.97 8.85 -34.44 -0.30 -15.27 16 12 H 0.07 1.84 7.79 -52.49 -0.41 1.44 16 13 C 0.08 2.20 5.42 -17.82 -0.10 2.10 16 14 N -0.86 -25.36 12.96 55.43 0.72 -24.64 16 15 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 O -0.35 -9.29 10.29 -59.04 -0.61 -9.90 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 1.03 6.00 -51.93 -0.31 0.71 16 24 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 25 H 0.08 1.26 5.89 -51.93 -0.31 0.96 16 26 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.27 8.11 -51.92 -0.42 0.85 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.98 6.24 -51.93 -0.32 0.66 16 32 H 0.06 1.33 8.03 -51.93 -0.42 0.91 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 272.98 15.07 4.11 4.11 Total: -1.00 -29.65 272.98 -6.41 -36.06 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.55 Total: -0.71 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 0.38 Total: -12.40 kcal Atomic # 7 Polarization: -25.36 SS G_CDS: 0.72 Total: -24.64 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -1.06 Total: -18.54 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.65 -6.41 -36.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258596185.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.300 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds