Wall clock time and date at job start Mon Mar 30 2020 02:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47324 * 2 1 4 4 C 1.53004 * 109.47360 * 119.99828 * 2 1 3 5 5 C 1.53000 * 109.47305 * 173.85092 * 4 2 1 6 6 C 1.52995 * 109.62458 * 305.60074 * 5 4 2 7 7 O 1.43362 * 109.51261 * 65.92095 * 5 4 2 8 8 C 1.44197 * 107.28991 * 120.47462 * 7 5 4 9 9 C 1.54917 * 103.07525 * 21.43594 * 8 7 5 10 10 H 1.08996 * 110.97820 * 82.54718 * 9 8 7 11 11 C 1.50700 * 111.00818 * 206.31648 * 9 8 7 12 12 H 1.07998 * 120.00335 * 353.81192 * 11 9 8 13 13 C 1.37877 * 119.99469 * 173.80691 * 11 9 8 14 14 N 1.31511 * 120.00684 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 119.99699 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47107 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47290 * 120.00061 * 15 13 11 18 18 H 1.48504 * 109.47149 * 240.00210 * 15 13 11 19 19 O 1.43756 * 109.62842 * 185.21027 * 5 4 2 20 20 H 1.09006 * 109.47061 * 300.00249 * 1 2 3 21 21 H 1.08998 * 109.47336 * 59.99911 * 1 2 3 22 22 H 1.09000 * 109.47497 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47488 * 239.99911 * 2 1 3 24 24 H 1.08998 * 109.47000 * 68.37315 * 3 2 1 25 25 H 1.09002 * 109.46738 * 188.37577 * 3 2 1 26 26 H 1.08999 * 109.46513 * 308.37266 * 3 2 1 27 27 H 1.08994 * 109.47301 * 53.84493 * 4 2 1 28 28 H 1.09009 * 109.46658 * 293.84756 * 4 2 1 29 29 H 1.09002 * 109.47883 * 300.30958 * 6 5 4 30 30 H 1.08999 * 109.46773 * 180.31061 * 6 5 4 31 31 H 1.09001 * 109.47146 * 60.31652 * 6 5 4 32 32 H 1.09006 * 110.69618 * 263.04149 * 8 7 5 33 33 H 1.08992 * 110.69591 * 139.83370 * 8 7 5 34 34 H 0.96998 * 120.00575 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5622 -0.8564 1.1744 6 6 3.9535 -1.5384 -0.1380 7 8 4.1622 0.4440 1.2391 8 6 5.0258 0.4606 2.3937 9 6 5.3012 -1.0428 2.6470 10 1 6.1017 -1.4068 2.0030 11 6 5.6218 -1.2964 4.0974 12 1 5.7336 -0.4661 4.7790 13 6 5.7724 -2.5885 4.5544 14 7 5.6367 -3.5996 3.7244 15 14 6.1706 -2.9029 6.3522 16 1 6.2725 -1.6072 7.0705 17 1 5.0937 -3.7240 6.9615 18 1 7.4629 -3.6274 6.4536 19 8 4.0326 -1.6392 2.2846 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8040 1.9113 0.9553 25 1 3.1197 1.4461 -0.1497 26 1 1.5596 1.9977 -0.8057 27 1 1.5896 -1.7121 1.3062 28 1 1.7693 -0.1476 2.1359 29 1 3.4952 -2.5263 -0.1850 30 1 5.0379 -1.6384 -0.1862 31 1 3.6065 -0.9365 -0.9779 32 1 4.5183 0.9085 3.2481 33 1 5.9527 0.9902 2.1738 34 1 5.7430 -4.5086 4.0458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258596185.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:42 Heat of formation + Delta-G solvation = -128.236957 kcal Electronic energy + Delta-G solvation = -15420.085180 eV Core-core repulsion = 12930.774158 eV Total energy + Delta-G solvation = -2489.311022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.21600 -37.31925 -35.62005 -34.66767 -32.33424 -29.81037 -27.94701 -27.75397 -26.63231 -23.10632 -22.37862 -20.40553 -18.90930 -17.76795 -17.16878 -16.56317 -16.18830 -15.49755 -15.09473 -14.62706 -14.52255 -14.26820 -13.98285 -13.60541 -13.20928 -13.04576 -12.85394 -12.85037 -12.69471 -12.56972 -12.31559 -12.14837 -11.66536 -11.59472 -11.39854 -11.14844 -10.85730 -10.55656 -10.10185 -8.24332 -6.46859 1.39791 1.40978 1.53973 2.36011 2.79809 3.06263 3.48774 3.90647 4.03087 4.16707 4.24932 4.33763 4.40953 4.47859 4.59505 4.68743 4.76178 4.80649 4.91856 4.98200 5.04379 5.08415 5.12650 5.24595 5.31869 5.36367 5.42536 5.56312 5.63209 5.69957 6.04096 6.54227 6.80887 7.29486 8.84761 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048921 B = 0.008236 C = 0.008037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.215576 B = 3398.925967 C = 3483.256246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.139 4.139 4 C -0.107 4.107 5 C 0.230 3.770 6 C -0.159 4.159 7 O -0.384 6.384 8 C 0.030 3.970 9 C 0.179 3.821 10 H 0.008 0.992 11 C -0.558 4.558 12 H 0.074 0.926 13 C 0.023 3.977 14 N -0.900 5.900 15 Si 0.970 3.030 16 H -0.259 1.259 17 H -0.280 1.280 18 H -0.273 1.273 19 O -0.387 6.387 20 H 0.051 0.949 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 6.528 -6.348 11.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.196 4.196 4 C -0.145 4.145 5 C 0.153 3.847 6 C -0.217 4.217 7 O -0.306 6.306 8 C -0.046 4.046 9 C 0.123 3.877 10 H 0.025 0.975 11 C -0.595 4.595 12 H 0.092 0.908 13 C -0.179 4.179 14 N -0.537 5.537 15 Si 0.794 3.206 16 H -0.183 1.183 17 H -0.206 1.206 18 H -0.199 1.199 19 O -0.308 6.308 20 H 0.070 0.930 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.097 0.903 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.659 6.328 -6.427 11.211 hybrid contribution 0.537 -0.597 0.984 1.270 sum -6.122 5.732 -5.443 9.998 Atomic orbital electron populations 1.21807 0.93748 1.01993 1.02283 1.21133 0.96570 0.96674 0.96443 1.21853 1.01583 0.95130 1.00999 1.21884 0.92128 1.00995 0.99505 1.23536 0.93300 0.78808 0.89034 1.22331 1.01154 1.01000 0.97171 1.88749 1.61983 1.32804 1.47068 1.24190 0.94141 0.98141 0.88123 1.21276 0.82997 0.87542 0.95840 0.97452 1.21323 1.50437 0.93469 0.94285 0.90772 1.26006 0.93286 0.95827 1.02816 1.70175 1.47321 0.99240 1.36927 0.85343 0.77873 0.78698 0.78726 1.18289 1.20596 1.19853 1.89507 1.37891 1.54878 1.48513 0.93014 0.90953 0.92544 0.90298 0.94040 0.92302 0.91697 0.91428 0.92773 0.91464 0.94091 0.89006 0.91996 0.88349 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.18 71.98 0.66 -2.45 16 2 C -0.09 -2.46 2.60 -10.79 -0.03 -2.49 16 3 C -0.14 -3.76 8.30 71.98 0.60 -3.17 16 4 C -0.11 -3.84 4.49 30.60 0.14 -3.70 16 5 C 0.23 9.74 1.13 30.59 0.03 9.77 16 6 C -0.16 -5.94 8.69 71.98 0.63 -5.31 16 7 O -0.38 -15.80 7.65 -126.22 -0.97 -16.76 16 8 C 0.03 1.32 7.52 72.64 0.55 1.87 16 9 C 0.18 9.56 3.31 30.50 0.10 9.66 16 10 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 11 C -0.56 -31.56 8.85 25.60 0.23 -31.33 16 12 H 0.07 3.98 7.79 -2.91 -0.02 3.96 16 13 C 0.02 1.33 5.42 84.66 0.46 1.79 16 14 N -0.90 -54.22 12.96 21.45 0.28 -53.94 16 15 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 O -0.39 -20.90 10.29 -126.22 -1.30 -22.20 16 20 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 21 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 23 H 0.08 2.04 6.00 -2.39 -0.01 2.03 16 24 H 0.04 1.18 8.11 -2.39 -0.02 1.16 16 25 H 0.06 1.81 5.89 -2.39 -0.01 1.80 16 26 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 27 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.05 2.04 8.11 -2.38 -0.02 2.02 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 2.80 6.24 -2.39 -0.01 2.79 16 32 H 0.06 2.68 8.03 -2.38 -0.02 2.66 16 33 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -64.05 272.98 4.45 -59.60 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.05 Total: 13.06 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.36 Total: -25.35 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.28 Total: -53.94 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -2.26 Total: -38.97 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -64.05 4.45 -59.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258596185.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.638 kcal (2) G-P(sol) polarization free energy of solvation -64.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds