Wall clock time and date at job start Mon Mar 30 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 C 1.52999 * 109.46689 * 240.00196 * 2 1 3 5 5 C 1.53002 * 109.47055 * 120.00127 * 2 1 3 6 6 C 1.53004 * 109.47009 * 65.58940 * 5 2 1 7 7 H 1.08996 * 110.35996 * 56.23871 * 6 5 2 8 8 O 1.44406 * 110.40084 * 293.91167 * 6 5 2 9 9 C 1.44289 * 104.60679 * 201.87365 * 8 6 5 10 10 C 1.54172 * 104.94442 * 23.64340 * 9 8 6 11 11 H 1.09009 * 110.34588 * 241.02921 * 10 9 8 12 12 C 1.50696 * 110.35075 * 118.86356 * 10 9 8 13 13 H 1.07997 * 119.99593 * 0.02562 * 12 10 9 14 14 C 1.37877 * 119.99894 * 179.97438 * 12 10 9 15 15 N 1.31502 * 120.00437 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 119.99688 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47060 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.46940 * 300.00440 * 16 14 12 19 19 H 1.48495 * 109.47035 * 60.00152 * 16 14 12 20 20 O 1.44291 * 104.94117 * 359.97438 * 10 9 8 21 21 H 1.09002 * 109.46657 * 291.75719 * 1 2 3 22 22 H 1.08990 * 109.47051 * 51.76271 * 1 2 3 23 23 H 1.08999 * 109.47082 * 171.76229 * 1 2 3 24 24 H 1.08995 * 109.47115 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47047 * 300.00195 * 3 2 1 26 26 H 1.09001 * 109.47093 * 60.00255 * 3 2 1 27 27 H 1.09000 * 109.47387 * 299.99615 * 4 2 1 28 28 H 1.08996 * 109.47377 * 59.99841 * 4 2 1 29 29 H 1.09005 * 109.46568 * 180.02562 * 4 2 1 30 30 H 1.08993 * 109.47532 * 305.58851 * 5 2 1 31 31 H 1.08999 * 109.46943 * 185.58240 * 5 2 1 32 32 H 1.08998 * 110.34795 * 264.77500 * 9 8 6 33 33 H 1.09003 * 110.43732 * 142.55400 * 9 8 6 34 34 H 0.97001 * 120.00206 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.6480 -2.1987 1.1809 7 1 2.0279 -2.6498 0.2644 8 8 0.2130 -2.3426 1.2556 9 6 0.0063 -3.6977 1.7061 10 6 1.3103 -4.0775 2.4356 11 1 1.7857 -4.9267 1.9445 12 6 1.0278 -4.3997 3.8803 13 1 0.0177 -4.3439 4.2584 14 6 2.0587 -4.7667 4.7191 15 7 3.2885 -4.8351 4.2586 16 14 1.7084 -5.1667 6.5099 17 1 2.9758 -5.5305 7.1929 18 1 1.1101 -3.9809 7.1741 19 1 0.7606 -6.3074 6.5860 20 8 2.1467 -2.9060 2.3367 21 1 -0.3633 0.3809 0.9545 22 1 -0.3633 0.6360 -0.8071 23 1 -0.3633 -1.0170 -0.1472 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6766 -0.2074 -2.1392 29 1 3.1300 -0.7216 -1.2490 30 1 1.5974 -0.2686 2.1364 31 1 3.1255 -0.6355 1.3006 32 1 -0.1585 -4.3589 0.8554 33 1 -0.8395 -3.7459 2.3920 34 1 3.4705 -4.6277 3.3286 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258681920.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:46 Heat of formation + Delta-G solvation = -118.522920 kcal Electronic energy + Delta-G solvation = -15301.886513 eV Core-core repulsion = 12812.996724 eV Total energy + Delta-G solvation = -2488.889789 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.45243 -37.05132 -34.01690 -32.66372 -29.78206 -27.43881 -27.13429 -26.94892 -24.22714 -21.95691 -21.30067 -18.53915 -17.13784 -16.42281 -15.39944 -14.84595 -14.37982 -14.07953 -13.90049 -13.73934 -13.23331 -12.65990 -12.36606 -12.13253 -12.01902 -11.60516 -11.39558 -11.30109 -11.05481 -10.77761 -10.59384 -10.41799 -10.36976 -10.16244 -9.91155 -9.55738 -8.86974 -8.57057 -8.24957 -6.44869 -4.24208 3.41083 3.44330 3.62479 4.46391 4.54848 4.68785 5.02560 5.08759 5.20503 5.44584 5.57731 5.69778 5.77466 5.79172 5.89759 5.93395 6.00239 6.00891 6.09521 6.12052 6.18833 6.25898 6.36376 6.47570 6.54799 6.59433 6.79975 6.93332 7.13626 7.91817 8.16508 8.35635 8.76680 9.58090 10.96112 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.051341 B = 0.007785 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.242116 B = 3595.893206 C = 3717.515328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.101 4.101 6 C 0.218 3.782 7 H 0.054 0.946 8 O -0.385 6.385 9 C 0.027 3.973 10 C 0.161 3.839 11 H 0.031 0.969 12 C -0.610 4.610 13 H 0.059 0.941 14 C 0.032 3.968 15 N -0.888 5.888 16 Si 1.072 2.928 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.286 1.286 20 O -0.378 6.378 21 H 0.052 0.948 22 H 0.041 0.959 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 7.479 -8.382 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.066 4.066 3 C -0.196 4.196 4 C -0.202 4.202 5 C -0.139 4.139 6 C 0.123 3.877 7 H 0.071 0.929 8 O -0.306 6.306 9 C -0.050 4.050 10 C 0.106 3.894 11 H 0.049 0.951 12 C -0.647 4.647 13 H 0.077 0.923 14 C -0.176 4.176 15 N -0.522 5.522 16 Si 0.899 3.101 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.212 1.212 20 O -0.299 6.299 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.095 0.905 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.542 7.233 -6.891 10.309 hybrid contribution -0.734 0.271 -1.596 1.777 sum -3.276 7.504 -8.487 11.793 Atomic orbital electron populations 1.21951 0.93926 1.02992 1.00746 1.20470 0.96481 0.94908 0.94751 1.21855 1.00725 0.95559 1.01444 1.21960 1.00722 1.00614 0.96874 1.21657 1.01107 0.92997 0.98105 1.24285 0.79280 0.93494 0.90664 0.92909 1.89144 1.23588 1.30486 1.87416 1.24039 1.01303 0.82633 0.96977 1.21255 0.85374 0.84855 0.97955 0.95111 1.21948 0.96604 1.51742 0.94395 0.92312 1.25943 0.92866 0.92953 1.05857 1.70691 1.20222 1.42833 1.18458 0.83522 0.75780 0.76515 0.74282 1.20586 1.21217 1.21223 1.89524 1.56624 1.38199 1.45565 0.92889 0.93976 0.90547 0.92851 0.92899 0.92690 0.92306 0.92958 0.92823 0.90666 0.90652 0.93603 0.89519 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 7.59 37.16 0.28 -1.75 16 2 C -0.07 -0.94 0.80 -154.51 -0.12 -1.07 16 3 C -0.14 -1.67 8.47 37.16 0.31 -1.36 16 4 C -0.14 -1.90 7.98 37.16 0.30 -1.60 16 5 C -0.10 -1.80 4.54 -26.73 -0.12 -1.92 16 6 C 0.22 4.58 3.36 37.16 0.12 4.70 16 7 H 0.05 1.05 6.18 -51.93 -0.32 0.73 16 8 O -0.38 -8.19 8.32 -59.42 -0.49 -8.68 16 9 C 0.03 0.60 7.54 37.77 0.28 0.89 16 10 C 0.16 4.23 2.90 -27.27 -0.08 4.15 16 11 H 0.03 0.84 7.94 -51.92 -0.41 0.43 16 12 C -0.61 -17.55 8.80 -34.44 -0.30 -17.85 16 13 H 0.06 1.65 7.36 -52.49 -0.39 1.26 16 14 C 0.03 0.94 5.43 -17.82 -0.10 0.84 16 15 N -0.89 -27.38 13.59 55.43 0.75 -26.63 16 16 Si 1.07 25.24 29.90 -169.99 -5.08 20.16 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 20 O -0.38 -10.00 10.26 -59.42 -0.61 -10.61 16 21 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 22 H 0.04 0.52 8.13 -51.93 -0.42 0.10 16 23 H 0.08 1.24 5.88 -51.93 -0.31 0.94 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.83 6.26 -51.93 -0.33 0.51 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.90 7.43 -51.93 -0.39 1.51 16 34 H 0.28 8.64 6.66 -40.82 -0.27 8.37 16 LS Contribution 269.88 15.07 4.07 4.07 Total: -1.00 -31.09 269.88 -6.22 -37.31 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.43 Total: -0.64 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 0.58 Total: -14.97 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.75 Total: -26.63 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.10 Total: -19.29 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.09 -6.22 -37.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258681920.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.217 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds