Wall clock time and date at job start Mon Mar 30 2020 02:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47077 * 2 1 4 4 C 1.52999 * 109.46689 * 240.00196 * 2 1 3 5 5 C 1.53002 * 109.47055 * 120.00127 * 2 1 3 6 6 C 1.53004 * 109.47009 * 65.58940 * 5 2 1 7 7 H 1.08996 * 110.35996 * 56.23871 * 6 5 2 8 8 O 1.44406 * 110.40084 * 293.91167 * 6 5 2 9 9 C 1.44289 * 104.60679 * 201.87365 * 8 6 5 10 10 C 1.54172 * 104.94442 * 23.64340 * 9 8 6 11 11 H 1.09009 * 110.34588 * 241.02921 * 10 9 8 12 12 C 1.50696 * 110.35075 * 118.86356 * 10 9 8 13 13 H 1.07997 * 119.99593 * 0.02562 * 12 10 9 14 14 C 1.37877 * 119.99894 * 179.97438 * 12 10 9 15 15 N 1.31502 * 120.00437 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 119.99688 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47060 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.46940 * 300.00440 * 16 14 12 19 19 H 1.48495 * 109.47035 * 60.00152 * 16 14 12 20 20 O 1.44291 * 104.94117 * 359.97438 * 10 9 8 21 21 H 1.09002 * 109.46657 * 291.75719 * 1 2 3 22 22 H 1.08990 * 109.47051 * 51.76271 * 1 2 3 23 23 H 1.08999 * 109.47082 * 171.76229 * 1 2 3 24 24 H 1.08995 * 109.47115 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47047 * 300.00195 * 3 2 1 26 26 H 1.09001 * 109.47093 * 60.00255 * 3 2 1 27 27 H 1.09000 * 109.47387 * 299.99615 * 4 2 1 28 28 H 1.08996 * 109.47377 * 59.99841 * 4 2 1 29 29 H 1.09005 * 109.46568 * 180.02562 * 4 2 1 30 30 H 1.08993 * 109.47532 * 305.58851 * 5 2 1 31 31 H 1.08999 * 109.46943 * 185.58240 * 5 2 1 32 32 H 1.08998 * 110.34795 * 264.77500 * 9 8 6 33 33 H 1.09003 * 110.43732 * 142.55400 * 9 8 6 34 34 H 0.97001 * 120.00206 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.6480 -2.1987 1.1809 7 1 2.0279 -2.6498 0.2644 8 8 0.2130 -2.3426 1.2556 9 6 0.0063 -3.6977 1.7061 10 6 1.3103 -4.0775 2.4356 11 1 1.7857 -4.9267 1.9445 12 6 1.0278 -4.3997 3.8803 13 1 0.0177 -4.3439 4.2584 14 6 2.0587 -4.7667 4.7191 15 7 3.2885 -4.8351 4.2586 16 14 1.7084 -5.1667 6.5099 17 1 2.9758 -5.5305 7.1929 18 1 1.1101 -3.9809 7.1741 19 1 0.7606 -6.3074 6.5860 20 8 2.1467 -2.9060 2.3367 21 1 -0.3633 0.3809 0.9545 22 1 -0.3633 0.6360 -0.8071 23 1 -0.3633 -1.0170 -0.1472 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6766 -0.2074 -2.1392 29 1 3.1300 -0.7216 -1.2490 30 1 1.5974 -0.2686 2.1364 31 1 3.1255 -0.6355 1.3006 32 1 -0.1585 -4.3589 0.8554 33 1 -0.8395 -3.7459 2.3920 34 1 3.4705 -4.6277 3.3286 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258681920.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:45 Heat of formation + Delta-G solvation = -137.911156 kcal Electronic energy + Delta-G solvation = -15302.727250 eV Core-core repulsion = 12812.996724 eV Total energy + Delta-G solvation = -2489.730526 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.20701 -38.36442 -35.93583 -34.76338 -31.54650 -29.08745 -28.20655 -28.07277 -26.30142 -23.55463 -23.29146 -19.91399 -19.09985 -18.17886 -17.09897 -16.64263 -16.07326 -15.67756 -15.30282 -15.23572 -14.65957 -14.42747 -14.15191 -13.46502 -13.40022 -13.17090 -12.78903 -12.62944 -12.58224 -12.41080 -12.22930 -11.93658 -11.64808 -11.57000 -11.48532 -11.40594 -10.74635 -10.65275 -10.29058 -8.74856 -6.55224 1.51616 1.60215 1.79877 2.52125 2.80058 2.97772 3.33892 3.80259 3.85857 3.94843 4.03602 4.07356 4.28397 4.38197 4.53933 4.60982 4.64300 4.81131 4.82158 4.92055 4.93668 4.97012 5.06817 5.09350 5.25062 5.32065 5.34913 5.49337 5.62243 5.78744 5.99493 6.32031 6.46675 7.36828 8.65492 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.051341 B = 0.007785 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.242116 B = 3595.893206 C = 3717.515328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.143 4.143 5 C -0.098 4.098 6 C 0.213 3.787 7 H 0.068 0.932 8 O -0.381 6.381 9 C 0.034 3.966 10 C 0.151 3.849 11 H 0.013 0.987 12 C -0.629 4.629 13 H 0.061 0.939 14 C -0.020 4.020 15 N -0.915 5.915 16 Si 1.120 2.880 17 H -0.281 1.281 18 H -0.273 1.273 19 H -0.261 1.261 20 O -0.411 6.411 21 H 0.040 0.960 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 8.451 -8.991 12.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 C -0.192 4.192 4 C -0.200 4.200 5 C -0.135 4.135 6 C 0.118 3.882 7 H 0.085 0.915 8 O -0.302 6.302 9 C -0.042 4.042 10 C 0.096 3.904 11 H 0.030 0.970 12 C -0.666 4.666 13 H 0.079 0.921 14 C -0.221 4.221 15 N -0.550 5.550 16 Si 0.940 3.060 17 H -0.207 1.207 18 H -0.199 1.199 19 H -0.185 1.185 20 O -0.333 6.333 21 H 0.059 0.941 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.362 8.214 -7.531 11.640 hybrid contribution -0.500 0.005 -1.492 1.573 sum -3.862 8.219 -9.022 12.801 Atomic orbital electron populations 1.21909 0.94069 1.02255 1.01080 1.20486 0.96307 0.96127 0.93336 1.21822 1.01157 0.93765 1.02441 1.21947 1.01142 0.99827 0.97094 1.21716 1.01261 0.91033 0.99535 1.24664 0.78914 0.95079 0.89504 0.91485 1.89160 1.23702 1.30041 1.87282 1.23957 0.99039 0.83488 0.97752 1.21217 0.87231 0.84650 0.97336 0.96985 1.22371 0.96822 1.51533 0.95827 0.92080 1.27528 0.92302 0.92175 1.10133 1.70825 1.21410 1.45120 1.17662 0.82924 0.76197 0.77614 0.69233 1.20654 1.19859 1.18542 1.89446 1.57417 1.38474 1.47983 0.94118 0.91369 0.92407 0.92227 0.90723 0.92905 0.93759 0.90606 0.92230 0.92419 0.90377 0.90678 0.89399 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 7.59 71.98 0.55 -3.16 16 2 C -0.06 -1.66 0.80 -52.18 -0.04 -1.70 16 3 C -0.13 -2.87 8.47 71.98 0.61 -2.26 16 4 C -0.14 -3.40 7.98 71.98 0.57 -2.83 16 5 C -0.10 -3.43 4.54 30.60 0.14 -3.29 16 6 C 0.21 8.92 3.36 71.98 0.24 9.16 16 7 H 0.07 2.63 6.18 -2.39 -0.01 2.61 16 8 O -0.38 -15.97 8.32 -125.85 -1.05 -17.02 16 9 C 0.03 1.50 7.54 72.38 0.55 2.04 16 10 C 0.15 8.09 2.90 30.24 0.09 8.17 16 11 H 0.01 0.70 7.94 -2.38 -0.02 0.68 16 12 C -0.63 -36.56 8.80 25.60 0.23 -36.34 16 13 H 0.06 3.42 7.36 -2.91 -0.02 3.40 16 14 C -0.02 -1.17 5.43 84.66 0.46 -0.71 16 15 N -0.91 -57.68 13.59 21.45 0.29 -57.39 16 16 Si 1.12 50.50 29.90 68.60 2.05 52.55 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 20 O -0.41 -22.24 10.26 -125.85 -1.29 -23.53 16 21 H 0.04 1.18 8.11 -2.39 -0.02 1.17 16 22 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 23 H 0.06 1.79 5.88 -2.39 -0.01 1.78 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 27 H 0.04 1.17 6.26 -2.39 -0.01 1.16 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.09 3.79 7.43 -2.39 -0.02 3.77 16 34 H 0.26 16.91 6.66 -92.71 -0.62 16.29 16 Total: -1.00 -67.37 269.88 4.60 -62.77 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.21 Total: 13.52 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 3.39 Total: -30.90 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.29 Total: -57.39 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -2.34 Total: -40.55 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Total: -67.37 4.60 -62.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258681920.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.144 kcal (2) G-P(sol) polarization free energy of solvation -67.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds