Wall clock time and date at job start Mon Mar 30 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46731 * 2 1 4 4 C 1.52995 * 109.47054 * 240.00209 * 2 1 3 5 5 C 1.53001 * 109.47480 * 120.00080 * 2 1 3 6 6 C 1.53000 * 109.46880 * 54.42839 * 5 2 1 7 7 H 1.09006 * 110.09179 * 304.45934 * 6 5 2 8 8 O 1.44384 * 110.11115 * 66.05377 * 6 5 2 9 9 C 1.44841 * 103.22785 * 158.46155 * 8 6 5 10 10 C 1.54449 * 103.06044 * 323.29780 * 9 8 6 11 11 H 1.09007 * 110.31739 * 262.98399 * 10 9 8 12 12 C 1.50695 * 110.31841 * 140.78959 * 10 9 8 13 13 H 1.08000 * 120.00549 * 359.97438 * 12 10 9 14 14 C 1.37880 * 119.99901 * 179.97438 * 12 10 9 15 15 N 1.31516 * 120.00068 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99885 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47234 * 60.00295 * 16 14 12 18 18 H 1.48504 * 109.46867 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47300 * 300.00202 * 16 14 12 20 20 O 1.43784 * 110.16545 * 182.82804 * 6 5 2 21 21 H 1.08998 * 109.47048 * 299.99695 * 1 2 3 22 22 H 1.08996 * 109.46896 * 60.00001 * 1 2 3 23 23 H 1.09003 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46821 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47430 * 299.99671 * 3 2 1 26 26 H 1.08998 * 109.47105 * 60.00340 * 3 2 1 27 27 H 1.09002 * 109.47540 * 308.66758 * 4 2 1 28 28 H 1.09007 * 109.47585 * 68.67134 * 4 2 1 29 29 H 1.09004 * 109.47097 * 188.66709 * 4 2 1 30 30 H 1.09002 * 109.46853 * 294.43382 * 5 2 1 31 31 H 1.08999 * 109.47322 * 174.43261 * 5 2 1 32 32 H 1.08998 * 110.72880 * 81.74583 * 9 8 6 33 33 H 1.09005 * 110.72630 * 204.85429 * 9 8 6 34 34 H 0.97002 * 120.00049 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 6 1.4190 -2.1177 1.3212 7 1 0.3317 -2.0459 1.2905 8 8 1.8941 -2.9294 0.2257 9 6 1.6744 -4.2817 0.6957 10 6 1.9936 -4.1833 2.2036 11 1 3.0173 -4.5048 2.3956 12 6 1.0238 -5.0184 2.9993 13 1 0.2470 -5.5728 2.4936 14 6 1.1281 -5.0747 4.3730 15 7 2.0736 -4.3993 4.9889 16 14 -0.0745 -6.1093 5.3594 17 1 0.0278 -7.5282 4.9334 18 1 0.2499 -6.0022 6.8046 19 1 -1.4568 -5.6204 5.1243 20 8 1.8369 -2.7846 2.5245 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.5558 -1.6944 -1.3302 28 1 1.8087 -0.1257 -2.1325 29 1 3.1190 -0.8573 -1.1752 30 1 1.7605 -0.1531 2.1364 31 1 3.1255 -0.8084 1.2007 32 1 0.6380 -4.5809 0.5393 33 1 2.3537 -4.9768 0.2020 34 1 2.1473 -4.4392 5.9553 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258681924.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:47 Heat of formation + Delta-G solvation = -112.723606 kcal Electronic energy + Delta-G solvation = -15264.333091 eV Core-core repulsion = 12775.694779 eV Total energy + Delta-G solvation = -2488.638312 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.27337 -36.90775 -33.73477 -32.50591 -29.83641 -27.41221 -27.04169 -26.89932 -24.60714 -21.83417 -20.95501 -18.42444 -16.79008 -15.97239 -15.38618 -15.11601 -14.48327 -13.99955 -13.89077 -13.46661 -12.97747 -12.32148 -12.24046 -12.08893 -11.91752 -11.50760 -11.38961 -11.17297 -11.00693 -10.90056 -10.57714 -10.44979 -10.32433 -10.22579 -10.11803 -9.34570 -9.08476 -8.60544 -8.03555 -6.07705 -4.24020 3.28085 3.32989 3.34917 4.36014 4.65432 4.82294 5.11337 5.16716 5.23628 5.51770 5.74292 5.78183 5.87146 5.93326 6.00431 6.06952 6.11896 6.13507 6.17356 6.26418 6.30936 6.36664 6.43662 6.55414 6.65934 6.67313 6.89048 7.05380 7.47814 7.78490 8.14943 8.45936 8.87494 9.48686 10.99250 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.050689 B = 0.007808 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.251717 B = 3585.128940 C = 3723.951226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.106 4.106 6 C 0.224 3.776 7 H 0.056 0.944 8 O -0.392 6.392 9 C 0.017 3.983 10 C 0.185 3.815 11 H 0.051 0.949 12 C -0.551 4.551 13 H 0.062 0.938 14 C 0.080 3.920 15 N -0.862 5.862 16 Si 0.895 3.105 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 O -0.372 6.372 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 6.959 -8.628 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.066 4.066 3 C -0.196 4.196 4 C -0.195 4.195 5 C -0.144 4.144 6 C 0.129 3.871 7 H 0.073 0.927 8 O -0.313 6.313 9 C -0.059 4.059 10 C 0.130 3.870 11 H 0.068 0.932 12 C -0.589 4.589 13 H 0.080 0.920 14 C -0.126 4.126 15 N -0.497 5.497 16 Si 0.722 3.278 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 O -0.293 6.293 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.135 7.180 -8.451 11.148 hybrid contribution -0.781 -0.688 0.652 1.228 sum -1.916 6.492 -7.799 10.327 Atomic orbital electron populations 1.21959 0.95007 1.02135 1.01078 1.20469 0.95470 0.94894 0.95800 1.21861 1.00899 0.95615 1.01200 1.21948 1.01323 1.00976 0.95296 1.21776 1.01223 0.94094 0.97268 1.24116 0.95735 0.90000 0.77269 0.92700 1.89300 1.85041 1.17204 1.39757 1.24386 1.00593 0.83946 0.97025 1.21105 0.97956 0.79465 0.88504 0.93156 1.21219 1.16586 1.28850 0.92197 0.91957 1.25066 0.95058 0.94555 0.97950 1.70025 1.31343 1.39155 1.09223 0.86639 0.81574 0.80671 0.78965 1.19978 1.21052 1.20030 1.89227 1.88601 1.22371 1.29101 0.92837 0.93145 0.92065 0.92813 0.93021 0.92879 0.90477 0.94104 0.93040 0.90684 0.91131 0.92242 0.89953 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.97 37.16 0.30 -1.70 16 2 C -0.07 -0.97 0.80 -154.51 -0.12 -1.09 16 3 C -0.14 -1.70 8.46 37.16 0.31 -1.39 16 4 C -0.14 -2.02 7.57 37.16 0.28 -1.74 16 5 C -0.11 -1.90 4.52 -26.73 -0.12 -2.02 16 6 C 0.22 4.81 3.48 37.16 0.13 4.94 16 7 H 0.06 1.17 6.12 -51.93 -0.32 0.86 16 8 O -0.39 -8.17 8.35 -59.28 -0.50 -8.67 16 9 C 0.02 0.37 7.33 37.92 0.28 0.64 16 10 C 0.18 4.87 3.54 -27.13 -0.10 4.77 16 11 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 12 C -0.55 -15.42 8.78 -34.44 -0.30 -15.72 16 13 H 0.06 1.67 7.54 -52.49 -0.40 1.27 16 14 C 0.08 2.27 5.43 -17.82 -0.10 2.18 16 15 N -0.86 -25.69 13.07 55.43 0.72 -24.96 16 16 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 O -0.37 -9.96 10.68 -59.28 -0.63 -10.59 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.92 6.24 -51.93 -0.32 0.60 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.26 5.90 -51.93 -0.31 0.95 16 28 H 0.04 0.51 8.13 -51.92 -0.42 0.09 16 29 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 32 H 0.06 1.25 7.68 -51.93 -0.40 0.85 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 272.13 15.07 4.10 4.10 Total: -1.00 -30.02 272.13 -6.29 -36.31 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.52 Total: -1.26 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 0.56 Total: -11.13 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.72 Total: -24.96 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -1.13 Total: -19.26 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.02 -6.29 -36.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258681924.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.417 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds