Wall clock time and date at job start Mon Mar 30 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46731 * 2 1 4 4 C 1.52995 * 109.47054 * 240.00209 * 2 1 3 5 5 C 1.53001 * 109.47480 * 120.00080 * 2 1 3 6 6 C 1.53000 * 109.46880 * 54.42839 * 5 2 1 7 7 H 1.09006 * 110.09179 * 304.45934 * 6 5 2 8 8 O 1.44384 * 110.11115 * 66.05377 * 6 5 2 9 9 C 1.44841 * 103.22785 * 158.46155 * 8 6 5 10 10 C 1.54449 * 103.06044 * 323.29780 * 9 8 6 11 11 H 1.09007 * 110.31739 * 262.98399 * 10 9 8 12 12 C 1.50695 * 110.31841 * 140.78959 * 10 9 8 13 13 H 1.08000 * 120.00549 * 359.97438 * 12 10 9 14 14 C 1.37880 * 119.99901 * 179.97438 * 12 10 9 15 15 N 1.31516 * 120.00068 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99885 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47234 * 60.00295 * 16 14 12 18 18 H 1.48504 * 109.46867 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47300 * 300.00202 * 16 14 12 20 20 O 1.43784 * 110.16545 * 182.82804 * 6 5 2 21 21 H 1.08998 * 109.47048 * 299.99695 * 1 2 3 22 22 H 1.08996 * 109.46896 * 60.00001 * 1 2 3 23 23 H 1.09003 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46821 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47430 * 299.99671 * 3 2 1 26 26 H 1.08998 * 109.47105 * 60.00340 * 3 2 1 27 27 H 1.09002 * 109.47540 * 308.66758 * 4 2 1 28 28 H 1.09007 * 109.47585 * 68.67134 * 4 2 1 29 29 H 1.09004 * 109.47097 * 188.66709 * 4 2 1 30 30 H 1.09002 * 109.46853 * 294.43382 * 5 2 1 31 31 H 1.08999 * 109.47322 * 174.43261 * 5 2 1 32 32 H 1.08998 * 110.72880 * 81.74583 * 9 8 6 33 33 H 1.09005 * 110.72630 * 204.85429 * 9 8 6 34 34 H 0.97002 * 120.00049 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 6 1.4190 -2.1177 1.3212 7 1 0.3317 -2.0459 1.2905 8 8 1.8941 -2.9294 0.2257 9 6 1.6744 -4.2817 0.6957 10 6 1.9936 -4.1833 2.2036 11 1 3.0173 -4.5048 2.3956 12 6 1.0238 -5.0184 2.9993 13 1 0.2470 -5.5728 2.4936 14 6 1.1281 -5.0747 4.3730 15 7 2.0736 -4.3993 4.9889 16 14 -0.0745 -6.1093 5.3594 17 1 0.0278 -7.5282 4.9334 18 1 0.2499 -6.0022 6.8046 19 1 -1.4568 -5.6204 5.1243 20 8 1.8369 -2.7846 2.5245 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.5558 -1.6944 -1.3302 28 1 1.8087 -0.1257 -2.1325 29 1 3.1190 -0.8573 -1.1752 30 1 1.7605 -0.1531 2.1364 31 1 3.1255 -0.8084 1.2007 32 1 0.6380 -4.5809 0.5393 33 1 2.3537 -4.9768 0.2020 34 1 2.1473 -4.4392 5.9553 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258681924.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:47 Heat of formation + Delta-G solvation = -131.187828 kcal Electronic energy + Delta-G solvation = -15265.133760 eV Core-core repulsion = 12775.694779 eV Total energy + Delta-G solvation = -2489.438981 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.01405 -38.23914 -35.64184 -34.58363 -31.61813 -29.07227 -28.15471 -28.03212 -26.58443 -23.47157 -22.90638 -19.68440 -18.87778 -17.73769 -17.14804 -16.84120 -16.35231 -15.30033 -15.14959 -15.10881 -14.57436 -14.08841 -13.96657 -13.43270 -13.35584 -12.98937 -12.80975 -12.71925 -12.55028 -12.40200 -12.37005 -12.28306 -11.56580 -11.51754 -11.50197 -11.21987 -10.90040 -10.70333 -10.00750 -8.21428 -6.45960 1.39852 1.42777 1.50881 2.36954 2.89923 3.05616 3.45425 3.90788 3.96868 4.03718 4.24343 4.29182 4.36915 4.53691 4.65066 4.68867 4.71235 4.87443 4.88129 4.97268 5.02169 5.11329 5.15541 5.28219 5.31703 5.35587 5.43183 5.54717 5.62256 5.68825 6.04658 6.49916 6.79313 7.31877 8.86444 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.050689 B = 0.007808 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.251717 B = 3585.128940 C = 3723.951226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.101 4.101 6 C 0.219 3.781 7 H 0.058 0.942 8 O -0.382 6.382 9 C 0.027 3.973 10 C 0.175 3.825 11 H 0.018 0.982 12 C -0.570 4.570 13 H 0.071 0.929 14 C 0.024 3.976 15 N -0.904 5.904 16 Si 0.968 3.032 17 H -0.261 1.261 18 H -0.282 1.282 19 H -0.269 1.269 20 O -0.407 6.407 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 7.447 -9.668 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C -0.191 4.191 4 C -0.192 4.192 5 C -0.139 4.139 6 C 0.124 3.876 7 H 0.075 0.925 8 O -0.303 6.303 9 C -0.050 4.050 10 C 0.119 3.881 11 H 0.036 0.964 12 C -0.607 4.607 13 H 0.089 0.911 14 C -0.179 4.179 15 N -0.541 5.541 16 Si 0.791 3.209 17 H -0.185 1.185 18 H -0.207 1.207 19 H -0.194 1.194 20 O -0.329 6.329 21 H 0.075 0.925 22 H 0.093 0.907 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.299 7.667 -9.517 12.435 hybrid contribution -0.389 -0.805 0.927 1.288 sum -2.688 6.863 -8.590 11.318 Atomic orbital electron populations 1.21944 0.94236 1.01396 1.02458 1.20487 0.96075 0.95996 0.93794 1.21822 1.01001 0.93806 1.02512 1.21900 1.00541 1.00427 0.96335 1.21794 1.00420 0.92327 0.99330 1.24392 0.96208 0.91185 0.75775 0.92503 1.89324 1.85017 1.16811 1.39178 1.24296 1.01735 0.84817 0.94136 1.21041 0.96056 0.79493 0.91477 0.96409 1.21632 1.16876 1.29224 0.92940 0.91121 1.26019 0.96870 0.95789 0.99222 1.70174 1.33385 1.41010 1.09491 0.85487 0.78944 0.79302 0.77143 1.18525 1.20745 1.19352 1.89154 1.88958 1.22754 1.32044 0.92537 0.90729 0.93826 0.92724 0.90875 0.92429 0.92375 0.91548 0.93834 0.90836 0.92166 0.91337 0.87515 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 7.97 71.98 0.57 -3.08 16 2 C -0.06 -1.73 0.80 -52.18 -0.04 -1.77 16 3 C -0.13 -2.92 8.46 71.98 0.61 -2.31 16 4 C -0.14 -3.67 7.57 71.98 0.54 -3.13 16 5 C -0.10 -3.59 4.52 30.59 0.14 -3.45 16 6 C 0.22 9.46 3.48 71.98 0.25 9.71 16 7 H 0.06 2.44 6.12 -2.38 -0.01 2.42 16 8 O -0.38 -15.81 8.35 -125.98 -1.05 -16.86 16 9 C 0.03 1.14 7.33 72.47 0.53 1.67 16 10 C 0.17 9.42 3.54 30.34 0.11 9.52 16 11 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 12 C -0.57 -32.16 8.78 25.60 0.22 -31.93 16 13 H 0.07 3.76 7.54 -2.91 -0.02 3.73 16 14 C 0.02 1.34 5.43 84.66 0.46 1.80 16 15 N -0.90 -55.14 13.07 21.45 0.28 -54.86 16 16 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 17 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 O -0.41 -22.40 10.68 -125.98 -1.35 -23.74 16 21 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.04 1.25 6.24 -2.39 -0.01 1.24 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.80 5.90 -2.39 -0.01 1.79 16 28 H 0.07 1.46 8.13 -2.38 -0.02 1.44 16 29 H 0.04 1.23 8.11 -2.38 -0.02 1.21 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.06 2.24 8.12 -2.39 -0.02 2.22 16 32 H 0.07 2.81 7.68 -2.39 -0.02 2.79 16 33 H 0.11 4.01 8.14 -2.38 -0.02 3.99 16 34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -64.94 272.13 4.36 -60.58 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.05 Total: 12.23 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 3.40 Total: -22.98 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.28 Total: -54.86 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -2.40 Total: -40.61 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -64.94 4.36 -60.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258681924.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.605 kcal (2) G-P(sol) polarization free energy of solvation -64.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds