Wall clock time and date at job start Mon Mar 30 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.46980 * 2 1 4 4 C 1.52998 * 109.46847 * 239.99969 * 2 1 3 5 5 C 1.53002 * 109.46956 * 119.99990 * 2 1 3 6 6 C 1.53005 * 109.47109 * 65.53467 * 5 2 1 7 7 H 1.08996 * 109.62732 * 53.53754 * 6 5 2 8 8 O 1.43751 * 109.62941 * 293.14678 * 6 5 2 9 9 C 1.44587 * 104.91922 * 215.71137 * 8 6 5 10 10 C 1.54916 * 101.63370 * 36.26895 * 9 8 6 11 11 H 1.09000 * 110.69532 * 82.75631 * 10 9 8 12 12 C 1.50705 * 110.69180 * 205.96089 * 10 9 8 13 13 H 1.07996 * 120.00281 * 355.11014 * 12 10 9 14 14 C 1.37878 * 120.00014 * 175.10976 * 12 10 9 15 15 N 1.31513 * 120.00118 * 179.97438 * 14 12 10 16 16 Si 1.86803 * 119.99889 * 0.02562 * 14 12 10 17 17 H 1.48504 * 109.47249 * 89.99789 * 16 14 12 18 18 H 1.48498 * 109.47215 * 209.99837 * 16 14 12 19 19 H 1.48501 * 109.47158 * 330.00016 * 16 14 12 20 20 O 1.43367 * 109.62743 * 173.93377 * 6 5 2 21 21 H 1.09005 * 109.47073 * 291.82292 * 1 2 3 22 22 H 1.08993 * 109.47552 * 51.82690 * 1 2 3 23 23 H 1.09002 * 109.47086 * 171.83054 * 1 2 3 24 24 H 1.08997 * 109.47487 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47547 * 300.00327 * 3 2 1 26 26 H 1.09002 * 109.47600 * 60.00407 * 3 2 1 27 27 H 1.08998 * 109.47485 * 300.00048 * 4 2 1 28 28 H 1.09001 * 109.47223 * 60.00351 * 4 2 1 29 29 H 1.09001 * 109.47166 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.47351 * 305.52940 * 5 2 1 31 31 H 1.08994 * 109.46909 * 185.53079 * 5 2 1 32 32 H 1.08996 * 111.08696 * 278.16229 * 9 8 6 33 33 H 1.08992 * 110.94745 * 154.31596 * 9 8 6 34 34 H 0.97006 * 119.99934 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.6467 -2.1984 1.1816 7 1 1.9901 -2.6259 0.2396 8 8 0.2177 -2.3224 1.2759 9 6 -0.0016 -3.5350 2.0323 10 6 1.1694 -3.4873 3.0455 11 1 0.9173 -2.8537 3.8959 12 6 1.5341 -4.8759 3.5036 13 1 0.9449 -5.7224 3.1833 14 6 2.6200 -5.0656 4.3317 15 7 2.9381 -6.2774 4.7319 16 14 3.6387 -3.6014 4.8864 17 1 3.0815 -3.0619 6.1528 18 1 5.0432 -4.0304 5.1068 19 1 3.6013 -2.5477 3.8407 20 8 2.2422 -2.9059 2.2772 21 1 -0.3633 0.3820 0.9541 22 1 -0.3634 0.6351 -0.8078 23 1 -0.3633 -1.0173 -0.1460 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2493 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2495 30 1 1.5981 -0.2678 2.1365 31 1 3.1254 -0.6363 1.3002 32 1 0.0714 -4.4147 1.3928 33 1 -0.9628 -3.5059 2.5452 34 1 3.7023 -6.4109 5.3142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258681927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:49 Heat of formation + Delta-G solvation = -106.425785 kcal Electronic energy + Delta-G solvation = -15368.476449 eV Core-core repulsion = 12880.111231 eV Total energy + Delta-G solvation = -2488.365218 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.60969 -37.05547 -34.08078 -32.61278 -30.18490 -27.60396 -27.16276 -27.01028 -24.79978 -22.04394 -20.90519 -18.58929 -17.07838 -16.22050 -15.79278 -15.13986 -14.40969 -14.18799 -13.99824 -13.44437 -13.06010 -12.64316 -12.60389 -12.22820 -12.02205 -11.87005 -11.59691 -11.33828 -11.28317 -10.89525 -10.55363 -10.47815 -10.43600 -10.18726 -9.75626 -9.54097 -9.15868 -8.64507 -8.32765 -6.18895 -4.29706 3.34356 3.39916 3.65041 4.38662 4.47264 4.73052 5.00619 5.05221 5.12383 5.37876 5.62471 5.67009 5.74007 5.79351 5.90853 5.91640 5.93853 6.01733 6.05712 6.09266 6.19321 6.22748 6.31773 6.41863 6.49349 6.53783 6.71294 6.78288 7.10018 7.54763 8.16861 8.32527 8.79600 9.43829 10.91144 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044558 B = 0.009310 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.245083 B = 3006.910919 C = 3341.598838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.145 4.145 5 C -0.120 4.120 6 C 0.223 3.777 7 H 0.068 0.932 8 O -0.390 6.390 9 C 0.029 3.971 10 C 0.149 3.851 11 H 0.040 0.960 12 C -0.531 4.531 13 H 0.081 0.919 14 C 0.087 3.913 15 N -0.888 5.888 16 Si 0.869 3.131 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.223 1.223 20 O -0.386 6.386 21 H 0.050 0.950 22 H 0.041 0.959 23 H 0.076 0.924 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 12.198 -8.494 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 C -0.196 4.196 4 C -0.202 4.202 5 C -0.158 4.158 6 C 0.128 3.872 7 H 0.085 0.915 8 O -0.312 6.312 9 C -0.047 4.047 10 C 0.094 3.906 11 H 0.057 0.943 12 C -0.568 4.568 13 H 0.099 0.901 14 C -0.118 4.118 15 N -0.524 5.524 16 Si 0.695 3.305 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.146 1.146 20 O -0.308 6.308 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.095 0.905 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.448 12.224 -8.443 15.056 hybrid contribution 0.591 0.426 0.445 0.854 sum -1.858 12.650 -7.998 15.081 Atomic orbital electron populations 1.21932 0.93965 1.02950 1.00601 1.20472 0.96415 0.94819 0.94984 1.21862 1.00687 0.95730 1.01329 1.21959 1.00733 1.00755 0.96740 1.22082 1.01154 0.94835 0.97753 1.23944 0.78728 0.92171 0.92387 0.91473 1.89069 1.22698 1.43774 1.75617 1.24301 1.00343 0.86884 0.93189 1.21686 0.83532 0.94929 0.90441 0.94288 1.20907 1.15298 0.90739 1.29869 0.90060 1.25015 0.96368 0.96113 0.94330 1.69914 1.27441 1.21342 1.33747 0.86978 0.79027 0.84739 0.79724 1.20898 1.21551 1.14613 1.89282 1.32966 1.69276 1.39284 0.93059 0.94014 0.90480 0.92930 0.92954 0.92850 0.92010 0.93050 0.92857 0.91355 0.90785 0.91462 0.89163 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.57 37.16 0.28 -1.60 16 2 C -0.07 -0.91 0.80 -154.51 -0.12 -1.03 16 3 C -0.14 -1.60 8.47 37.15 0.31 -1.29 16 4 C -0.14 -1.84 7.98 37.16 0.30 -1.54 16 5 C -0.12 -2.00 4.48 -26.73 -0.12 -2.12 16 6 C 0.22 4.36 3.67 37.16 0.14 4.50 16 7 H 0.07 1.27 5.98 -51.93 -0.31 0.96 16 8 O -0.39 -7.51 8.17 -59.05 -0.48 -7.99 16 9 C 0.03 0.59 7.37 38.17 0.28 0.87 16 10 C 0.15 3.61 2.88 -26.87 -0.08 3.53 16 11 H 0.04 0.95 7.70 -51.93 -0.40 0.55 16 12 C -0.53 -15.00 9.41 -34.44 -0.32 -15.33 16 13 H 0.08 2.42 8.02 -52.49 -0.42 2.00 16 14 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 15 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 16 Si 0.87 21.88 27.12 -169.99 -4.61 17.27 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.22 -5.51 5.37 56.52 0.30 -5.20 16 20 O -0.39 -9.25 7.95 -59.05 -0.47 -9.72 16 21 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 22 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 23 H 0.08 1.17 5.90 -51.93 -0.31 0.86 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.85 6.20 -51.93 -0.32 0.52 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 33 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 266.39 15.07 4.01 4.01 Total: -1.00 -29.99 266.39 -5.84 -35.83 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.64 Total: -1.56 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 0.57 Total: -11.57 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.77 Total: -26.27 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.95 Total: -17.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.61 Total: 17.27 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.99 -5.84 -35.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258681927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.597 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds