Wall clock time and date at job start Mon Mar 30 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.46980 * 2 1 4 4 C 1.52998 * 109.46847 * 239.99969 * 2 1 3 5 5 C 1.53002 * 109.46956 * 119.99990 * 2 1 3 6 6 C 1.53005 * 109.47109 * 65.53467 * 5 2 1 7 7 H 1.08996 * 109.62732 * 53.53754 * 6 5 2 8 8 O 1.43751 * 109.62941 * 293.14678 * 6 5 2 9 9 C 1.44587 * 104.91922 * 215.71137 * 8 6 5 10 10 C 1.54916 * 101.63370 * 36.26895 * 9 8 6 11 11 H 1.09000 * 110.69532 * 82.75631 * 10 9 8 12 12 C 1.50705 * 110.69180 * 205.96089 * 10 9 8 13 13 H 1.07996 * 120.00281 * 355.11014 * 12 10 9 14 14 C 1.37878 * 120.00014 * 175.10976 * 12 10 9 15 15 N 1.31513 * 120.00118 * 179.97438 * 14 12 10 16 16 Si 1.86803 * 119.99889 * 0.02562 * 14 12 10 17 17 H 1.48504 * 109.47249 * 89.99789 * 16 14 12 18 18 H 1.48498 * 109.47215 * 209.99837 * 16 14 12 19 19 H 1.48501 * 109.47158 * 330.00016 * 16 14 12 20 20 O 1.43367 * 109.62743 * 173.93377 * 6 5 2 21 21 H 1.09005 * 109.47073 * 291.82292 * 1 2 3 22 22 H 1.08993 * 109.47552 * 51.82690 * 1 2 3 23 23 H 1.09002 * 109.47086 * 171.83054 * 1 2 3 24 24 H 1.08997 * 109.47487 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47547 * 300.00327 * 3 2 1 26 26 H 1.09002 * 109.47600 * 60.00407 * 3 2 1 27 27 H 1.08998 * 109.47485 * 300.00048 * 4 2 1 28 28 H 1.09001 * 109.47223 * 60.00351 * 4 2 1 29 29 H 1.09001 * 109.47166 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.47351 * 305.52940 * 5 2 1 31 31 H 1.08994 * 109.46909 * 185.53079 * 5 2 1 32 32 H 1.08996 * 111.08696 * 278.16229 * 9 8 6 33 33 H 1.08992 * 110.94745 * 154.31596 * 9 8 6 34 34 H 0.97006 * 119.99934 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.6467 -2.1984 1.1816 7 1 1.9901 -2.6259 0.2396 8 8 0.2177 -2.3224 1.2759 9 6 -0.0016 -3.5350 2.0323 10 6 1.1694 -3.4873 3.0455 11 1 0.9173 -2.8537 3.8959 12 6 1.5341 -4.8759 3.5036 13 1 0.9449 -5.7224 3.1833 14 6 2.6200 -5.0656 4.3317 15 7 2.9381 -6.2774 4.7319 16 14 3.6387 -3.6014 4.8864 17 1 3.0815 -3.0619 6.1528 18 1 5.0432 -4.0304 5.1068 19 1 3.6013 -2.5477 3.8407 20 8 2.2422 -2.9059 2.2772 21 1 -0.3633 0.3820 0.9541 22 1 -0.3634 0.6351 -0.8078 23 1 -0.3633 -1.0173 -0.1460 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2493 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7209 -1.2495 30 1 1.5981 -0.2678 2.1365 31 1 3.1254 -0.6363 1.3002 32 1 0.0714 -4.4147 1.3928 33 1 -0.9628 -3.5059 2.5452 34 1 3.7023 -6.4109 5.3142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258681927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:49 Heat of formation + Delta-G solvation = -125.082588 kcal Electronic energy + Delta-G solvation = -15369.285468 eV Core-core repulsion = 12880.111231 eV Total energy + Delta-G solvation = -2489.174238 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.22649 -38.26396 -35.82947 -34.73019 -31.91539 -29.15046 -28.15789 -28.04840 -26.68905 -23.53339 -22.79861 -19.74657 -19.17534 -17.89650 -17.46673 -16.68167 -16.24543 -15.35885 -15.28959 -14.86992 -14.69903 -14.62261 -14.13701 -13.59246 -13.41262 -13.21505 -12.91488 -12.72461 -12.50585 -12.44748 -12.31810 -11.92400 -11.65240 -11.50085 -11.44454 -11.34111 -10.89220 -10.79998 -10.06819 -8.41349 -6.56441 1.34575 1.36778 1.65509 2.38030 2.70955 2.99066 3.42440 3.89220 3.94662 3.98832 4.09938 4.27198 4.36394 4.50778 4.53952 4.67727 4.69737 4.84529 4.87670 4.96375 4.98632 5.10862 5.15043 5.16723 5.21553 5.32497 5.40692 5.51233 5.54877 5.69681 6.06917 6.42543 6.59212 7.20876 8.72110 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044558 B = 0.009310 C = 0.008377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.245083 B = 3006.910919 C = 3341.598838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.065 4.065 3 C -0.135 4.135 4 C -0.144 4.144 5 C -0.116 4.116 6 C 0.215 3.785 7 H 0.074 0.926 8 O -0.379 6.379 9 C 0.036 3.964 10 C 0.147 3.853 11 H 0.043 0.957 12 C -0.539 4.539 13 H 0.050 0.950 14 C 0.032 3.968 15 N -0.932 5.932 16 Si 0.932 3.068 17 H -0.273 1.273 18 H -0.289 1.289 19 H -0.215 1.215 20 O -0.409 6.409 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 14.674 -9.424 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.065 4.065 3 C -0.192 4.192 4 C -0.201 4.201 5 C -0.154 4.154 6 C 0.121 3.879 7 H 0.092 0.908 8 O -0.300 6.300 9 C -0.040 4.040 10 C 0.092 3.908 11 H 0.060 0.940 12 C -0.577 4.577 13 H 0.068 0.932 14 C -0.168 4.168 15 N -0.571 5.571 16 Si 0.756 3.244 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.138 1.138 20 O -0.331 6.331 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.464 14.710 -9.388 17.623 hybrid contribution 0.533 -0.382 0.656 0.928 sum -1.930 14.327 -8.732 16.889 Atomic orbital electron populations 1.21891 0.93976 1.02192 1.01094 1.20493 0.96364 0.95954 0.93731 1.21822 1.01019 0.94090 1.02275 1.21949 1.01042 0.99978 0.97133 1.22075 1.01308 0.92754 0.99247 1.24265 0.78621 0.93819 0.91229 0.90850 1.89109 1.22557 1.43031 1.75291 1.24207 1.00141 0.87270 0.92426 1.21540 0.84921 0.92707 0.91648 0.93951 1.21160 1.14704 0.92081 1.29705 0.93150 1.25878 0.97715 0.98655 0.94598 1.70030 1.28507 1.23432 1.35134 0.86002 0.77265 0.81511 0.79658 1.19837 1.21478 1.13795 1.89180 1.33476 1.69987 1.40501 0.93690 0.91904 0.92270 0.92443 0.91197 0.92769 0.93497 0.91085 0.92423 0.92009 0.90586 0.91984 0.86650 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 7.57 71.98 0.54 -2.76 16 2 C -0.07 -1.59 0.80 -52.18 -0.04 -1.63 16 3 C -0.13 -2.64 8.47 71.98 0.61 -2.03 16 4 C -0.14 -3.25 7.98 71.98 0.57 -2.68 16 5 C -0.12 -3.60 4.48 30.60 0.14 -3.46 16 6 C 0.22 8.09 3.67 71.98 0.26 8.36 16 7 H 0.07 2.68 5.98 -2.39 -0.01 2.67 16 8 O -0.38 -13.95 8.17 -126.20 -1.03 -14.98 16 9 C 0.04 1.42 7.37 72.64 0.54 1.95 16 10 C 0.15 7.04 2.88 30.50 0.09 7.13 16 11 H 0.04 2.01 7.70 -2.39 -0.02 1.99 16 12 C -0.54 -30.93 9.41 25.60 0.24 -30.69 16 13 H 0.05 3.11 8.02 -2.91 -0.02 3.09 16 14 C 0.03 1.89 5.47 84.66 0.46 2.36 16 15 N -0.93 -58.00 13.96 21.45 0.30 -57.70 16 16 Si 0.93 45.26 27.12 68.60 1.86 47.12 16 17 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 19 H -0.22 -10.10 5.37 99.48 0.53 -9.57 16 20 O -0.41 -19.15 7.95 -126.20 -1.00 -20.15 16 21 H 0.04 1.15 8.12 -2.38 -0.02 1.13 16 22 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 23 H 0.06 1.67 5.90 -2.39 -0.01 1.65 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.19 6.20 -2.39 -0.01 1.17 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.52 8.04 -2.39 -0.02 2.50 16 33 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 34 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -63.94 266.39 4.42 -59.52 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.88 Total: 9.65 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.41 Total: -23.46 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.30 Total: -57.70 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -2.03 Total: -35.14 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.86 Total: 47.12 kcal Total: -63.94 4.42 -59.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258681927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.558 kcal (2) G-P(sol) polarization free energy of solvation -63.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds