Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46959 * 111.00007 * 2 1 4 4 C 1.53053 * 109.36396 * 176.81123 * 3 2 1 5 5 N 1.46955 * 109.36242 * 58.40715 * 4 3 2 6 6 C 1.46955 * 110.87898 * 300.67842 * 5 4 3 7 7 H 1.09000 * 109.49195 * 179.29379 * 6 5 4 8 8 C 1.50708 * 109.49060 * 299.35406 * 6 5 4 9 9 H 1.08003 * 120.00121 * 119.99905 * 8 6 5 10 10 C 1.37880 * 119.99733 * 300.00500 * 8 6 5 11 11 N 1.31512 * 119.99841 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 119.99901 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46846 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47124 * 119.99350 * 12 10 8 15 15 H 1.48494 * 109.47237 * 239.99922 * 12 10 8 16 16 C 1.46955 * 110.99824 * 236.20619 * 2 1 3 17 17 H 1.08998 * 109.49377 * 63.22027 * 16 2 1 18 18 C 1.50705 * 109.48833 * 303.15300 * 16 2 1 19 19 O 1.20824 * 119.99709 * 340.00014 * 18 16 2 20 20 O 1.34224 * 119.99646 * 160.00046 * 18 16 2 21 21 H 1.08999 * 109.47248 * 56.03972 * 1 2 3 22 22 H 1.08997 * 109.46846 * 176.04178 * 1 2 3 23 23 H 1.09003 * 109.46591 * 296.04375 * 1 2 3 24 24 H 1.09004 * 109.48713 * 56.84728 * 3 2 1 25 25 H 1.08995 * 109.51046 * 296.79346 * 3 2 1 26 26 H 1.08998 * 109.48872 * 298.43541 * 4 3 2 27 27 H 1.09000 * 109.50504 * 178.38134 * 4 3 2 28 28 H 1.00901 * 111.00068 * 64.54233 * 5 4 3 29 29 H 0.97002 * 119.99488 * 180.02562 * 11 10 8 30 30 H 0.96703 * 117.00019 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 0.0803 5 7 4.0501 0.5660 -1.0598 6 6 3.5234 -0.8059 -1.0599 7 1 3.9178 -1.3469 -1.9202 8 6 3.9408 -1.5049 0.2084 9 1 3.1917 -1.8826 0.8885 10 6 5.2792 -1.6621 0.5004 11 7 6.1913 -1.2025 -0.3280 12 14 5.7966 -2.5277 2.0728 13 1 4.5883 -2.9469 2.8276 14 1 6.6093 -3.7238 1.7349 15 1 6.6032 -1.6003 2.9060 16 6 1.9956 -0.7631 -1.1402 17 1 1.6938 -0.2819 -2.0704 18 6 1.4504 -2.1675 -1.1000 19 8 1.0120 -2.6160 -0.0674 20 8 1.4520 -2.9199 -2.2115 21 1 -0.3634 0.5741 -0.8524 22 1 -0.3633 -1.0252 -0.0709 23 1 -0.3632 0.4512 0.9234 24 1 1.6014 1.9129 0.8603 25 1 1.6938 1.8778 -0.9171 26 1 3.8254 0.8479 1.0106 27 1 3.9181 2.3447 0.0515 28 1 3.8464 1.0315 -1.9316 29 1 7.1329 -1.3134 -0.1226 30 1 1.0924 -3.8145 -2.1366 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259388516.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = -65.452654 kcal Electronic energy + Delta-G solvation = -15495.817193 eV Core-core repulsion = 12905.688360 eV Total energy + Delta-G solvation = -2590.128833 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.97236 -37.87926 -35.39888 -33.79107 -31.94197 -30.44096 -26.92638 -25.45879 -23.85246 -22.01652 -20.97891 -19.13001 -17.45381 -16.24537 -15.80050 -15.32038 -14.93810 -14.36304 -14.26027 -13.82342 -13.30220 -13.06168 -12.41506 -12.07762 -11.89876 -11.49241 -11.38154 -10.90496 -10.68602 -10.55369 -10.50412 -10.19384 -9.69051 -9.59382 -8.96881 -8.34219 -7.78813 -6.97201 -5.82295 -3.90495 2.99284 3.39387 3.47496 3.55559 3.57881 4.51042 4.57305 5.31539 5.49703 5.60592 5.66098 5.67313 5.89169 6.00866 6.01624 6.08572 6.23495 6.30731 6.44638 7.03089 7.12506 7.24465 7.55355 7.66136 8.04365 8.15027 8.38295 8.64946 8.87409 9.22997 9.75367 11.23433 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.027391 B = 0.014479 C = 0.012110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.002511 B = 1933.435136 C = 2311.505749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.502 5.502 3 C 0.028 3.972 4 C 0.072 3.928 5 N -0.643 5.643 6 C 0.233 3.767 7 H 0.054 0.946 8 C -0.515 4.515 9 H 0.070 0.930 10 C 0.080 3.920 11 N -0.854 5.854 12 Si 0.881 3.119 13 H -0.272 1.272 14 H -0.287 1.287 15 H -0.286 1.286 16 C 0.070 3.930 17 H 0.044 0.956 18 C 0.500 3.500 19 O -0.504 6.504 20 O -0.524 6.524 21 H 0.012 0.988 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.018 0.982 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.299 0.701 29 H 0.254 0.746 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 2.744 -2.838 9.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.227 5.227 3 C -0.102 4.102 4 C -0.059 4.059 5 N -0.268 5.268 6 C 0.124 3.876 7 H 0.072 0.928 8 C -0.554 4.554 9 H 0.089 0.911 10 C -0.126 4.126 11 N -0.490 5.490 12 Si 0.709 3.291 13 H -0.197 1.197 14 H -0.213 1.213 15 H -0.212 1.212 16 C -0.041 4.041 17 H 0.061 0.939 18 C 0.342 3.658 19 O -0.390 6.390 20 O -0.335 6.335 21 H 0.030 0.970 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.036 0.964 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -7.239 2.642 -1.871 7.930 hybrid contribution -1.199 -0.439 -0.068 1.279 sum -8.438 2.203 -1.939 8.934 Atomic orbital electron populations 1.22568 0.88731 1.02148 0.99850 1.61676 1.06018 1.13195 1.41851 1.22963 1.00105 0.87804 0.99322 1.21916 0.88369 0.96833 0.98748 1.61005 1.60823 1.02772 1.02232 1.19365 0.80448 0.87848 0.99918 0.92790 1.21015 0.91963 1.36572 1.05889 0.91143 1.24928 0.96801 0.94779 0.96071 1.70107 1.00006 1.43561 1.35296 0.86719 0.78561 0.79353 0.84463 1.19677 1.21348 1.21186 1.22317 1.02966 0.87217 0.91646 0.93884 1.23093 0.73940 0.88483 0.80297 1.90612 1.43471 1.73098 1.31807 1.84545 1.78453 1.30358 1.40103 0.96990 0.90931 0.91556 0.91040 0.96362 0.88933 0.92635 0.88573 0.93660 0.74294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.25 60.07 0.56 0.82 16 2 N -0.50 -10.08 4.12 -236.12 -0.97 -11.05 16 3 C 0.03 0.49 5.61 -3.76 -0.02 0.47 16 4 C 0.07 1.46 6.43 -3.77 -0.02 1.44 16 5 N -0.64 -14.51 6.01 -107.81 -0.65 -15.16 16 6 C 0.23 5.63 2.51 -68.80 -0.17 5.46 16 7 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 8 C -0.52 -14.10 6.32 -34.44 -0.22 -14.32 16 9 H 0.07 2.07 6.78 -52.48 -0.36 1.71 16 10 C 0.08 2.23 5.39 -17.82 -0.10 2.13 16 11 N -0.85 -24.52 12.77 55.43 0.71 -23.81 16 12 Si 0.88 21.96 29.54 -169.99 -5.02 16.94 16 13 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 C 0.07 1.47 2.14 -68.81 -0.15 1.33 16 17 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 18 C 0.50 10.42 5.85 36.01 0.21 10.63 16 19 O -0.50 -11.57 14.87 -18.75 -0.28 -11.85 16 20 O -0.52 -9.03 13.42 -39.24 -0.53 -9.56 16 21 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 22 H 0.07 1.31 5.69 -51.93 -0.30 1.02 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 2.19 7.13 -51.93 -0.37 1.82 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.30 5.99 8.89 -39.29 -0.35 5.64 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.40 4.88 9.10 45.56 0.41 5.29 16 LS Contribution 248.43 15.07 3.74 3.74 Total: -1.00 -31.61 248.43 -5.96 -37.56 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -3.05 Total: 5.23 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 0.09 Total: 7.95 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.91 Total: -50.02 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.81 Total: -21.41 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.61 -5.96 -37.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259388516.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.889 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds