Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46959 * 111.00007 * 2 1 4 4 C 1.53053 * 109.36396 * 176.81123 * 3 2 1 5 5 N 1.46955 * 109.36242 * 58.40715 * 4 3 2 6 6 C 1.46955 * 110.87898 * 300.67842 * 5 4 3 7 7 H 1.09000 * 109.49195 * 179.29379 * 6 5 4 8 8 C 1.50708 * 109.49060 * 299.35406 * 6 5 4 9 9 H 1.08003 * 120.00121 * 119.99905 * 8 6 5 10 10 C 1.37880 * 119.99733 * 300.00500 * 8 6 5 11 11 N 1.31512 * 119.99841 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 119.99901 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46846 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47124 * 119.99350 * 12 10 8 15 15 H 1.48494 * 109.47237 * 239.99922 * 12 10 8 16 16 C 1.46955 * 110.99824 * 236.20619 * 2 1 3 17 17 H 1.08998 * 109.49377 * 63.22027 * 16 2 1 18 18 C 1.50705 * 109.48833 * 303.15300 * 16 2 1 19 19 O 1.20824 * 119.99709 * 340.00014 * 18 16 2 20 20 O 1.34224 * 119.99646 * 160.00046 * 18 16 2 21 21 H 1.08999 * 109.47248 * 56.03972 * 1 2 3 22 22 H 1.08997 * 109.46846 * 176.04178 * 1 2 3 23 23 H 1.09003 * 109.46591 * 296.04375 * 1 2 3 24 24 H 1.09004 * 109.48713 * 56.84728 * 3 2 1 25 25 H 1.08995 * 109.51046 * 296.79346 * 3 2 1 26 26 H 1.08998 * 109.48872 * 298.43541 * 4 3 2 27 27 H 1.09000 * 109.50504 * 178.38134 * 4 3 2 28 28 H 1.00901 * 111.00068 * 64.54233 * 5 4 3 29 29 H 0.97002 * 119.99488 * 180.02562 * 11 10 8 30 30 H 0.96703 * 117.00019 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 0.0803 5 7 4.0501 0.5660 -1.0598 6 6 3.5234 -0.8059 -1.0599 7 1 3.9178 -1.3469 -1.9202 8 6 3.9408 -1.5049 0.2084 9 1 3.1917 -1.8826 0.8885 10 6 5.2792 -1.6621 0.5004 11 7 6.1913 -1.2025 -0.3280 12 14 5.7966 -2.5277 2.0728 13 1 4.5883 -2.9469 2.8276 14 1 6.6093 -3.7238 1.7349 15 1 6.6032 -1.6003 2.9060 16 6 1.9956 -0.7631 -1.1402 17 1 1.6938 -0.2819 -2.0704 18 6 1.4504 -2.1675 -1.1000 19 8 1.0120 -2.6160 -0.0674 20 8 1.4520 -2.9199 -2.2115 21 1 -0.3634 0.5741 -0.8524 22 1 -0.3633 -1.0252 -0.0709 23 1 -0.3632 0.4512 0.9234 24 1 1.6014 1.9129 0.8603 25 1 1.6938 1.8778 -0.9171 26 1 3.8254 0.8479 1.0106 27 1 3.9181 2.3447 0.0515 28 1 3.8464 1.0315 -1.9316 29 1 7.1329 -1.3134 -0.1226 30 1 1.0924 -3.8145 -2.1366 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259388516.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = -91.570264 kcal Electronic energy + Delta-G solvation = -15496.949738 eV Core-core repulsion = 12905.688360 eV Total energy + Delta-G solvation = -2591.261378 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.56633 -39.45926 -36.95901 -35.51801 -33.86003 -32.15548 -28.40705 -27.46520 -25.41453 -23.68749 -22.58661 -20.82974 -19.04141 -18.06708 -17.52276 -17.01802 -16.58315 -16.24527 -15.80246 -15.44755 -14.89844 -14.65983 -14.11917 -13.64508 -13.57005 -12.97649 -12.94451 -12.84752 -12.48520 -12.36189 -12.20738 -11.85515 -11.61433 -11.27323 -10.98104 -10.46276 -9.25513 -8.64977 -7.94203 -6.06296 1.35052 1.41162 1.43382 1.55042 2.12854 2.50432 3.03400 3.32457 3.92327 4.03899 4.19626 4.29156 4.34573 4.54334 4.55616 4.64142 4.82497 4.92017 4.96408 5.23034 5.52823 5.70512 5.88967 6.04718 6.16439 6.24309 6.57647 7.00739 7.16295 7.27533 7.61172 9.10266 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.027391 B = 0.014479 C = 0.012110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.002511 B = 1933.435136 C = 2311.505749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.531 5.531 3 C 0.034 3.966 4 C 0.075 3.925 5 N -0.661 5.661 6 C 0.237 3.763 7 H 0.025 0.975 8 C -0.514 4.514 9 H 0.046 0.954 10 C 0.039 3.961 11 N -0.879 5.879 12 Si 0.932 3.068 13 H -0.282 1.282 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.073 3.927 17 H 0.064 0.936 18 C 0.500 3.500 19 O -0.531 6.531 20 O -0.516 6.516 21 H 0.035 0.965 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.315 0.685 29 H 0.253 0.747 30 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 3.587 -3.083 10.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.257 5.257 3 C -0.094 4.094 4 C -0.055 4.055 5 N -0.288 5.288 6 C 0.128 3.872 7 H 0.043 0.957 8 C -0.553 4.553 9 H 0.065 0.935 10 C -0.164 4.164 11 N -0.516 5.516 12 Si 0.759 3.241 13 H -0.207 1.207 14 H -0.208 1.208 15 H -0.207 1.207 16 C -0.039 4.039 17 H 0.081 0.919 18 C 0.343 3.657 19 O -0.420 6.420 20 O -0.329 6.329 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.099 0.901 24 H 0.111 0.889 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.132 0.868 29 H 0.063 0.937 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -8.207 3.477 -2.131 9.164 hybrid contribution -0.944 -0.718 -0.033 1.187 sum -9.151 2.758 -2.164 9.800 Atomic orbital electron populations 1.22530 0.86751 1.01814 1.01614 1.61613 1.07961 1.14328 1.41814 1.22887 0.97906 0.87222 1.01423 1.21840 0.90578 0.97159 0.95957 1.60743 1.61854 1.02432 1.03785 1.18998 0.82855 0.88320 0.97057 0.95688 1.21041 0.91381 1.36458 1.06464 0.93547 1.25461 0.97060 0.95615 0.98280 1.70185 1.00032 1.44906 1.36489 0.85934 0.77703 0.78660 0.81757 1.20737 1.20810 1.20658 1.22104 1.00697 0.87959 0.93104 0.91872 1.23157 0.73354 0.88800 0.80421 1.90599 1.44769 1.73734 1.32903 1.84485 1.78094 1.31820 1.38503 0.94662 0.92423 0.90095 0.88932 0.93966 0.92947 0.90101 0.86767 0.93746 0.71684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.25 127.69 1.18 1.83 16 2 N -0.53 -20.29 4.12 -900.94 -3.71 -24.01 16 3 C 0.03 1.13 5.61 86.31 0.48 1.62 16 4 C 0.07 2.93 6.43 86.31 0.56 3.48 16 5 N -0.66 -29.25 6.01 -495.00 -2.97 -32.23 16 6 C 0.24 11.42 2.51 44.18 0.11 11.53 16 7 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 8 C -0.51 -28.40 6.32 25.60 0.16 -28.24 16 9 H 0.05 2.76 6.78 -2.91 -0.02 2.74 16 10 C 0.04 2.17 5.39 84.66 0.46 2.63 16 11 N -0.88 -50.79 12.77 21.45 0.27 -50.52 16 12 Si 0.93 45.62 29.54 68.60 2.03 47.65 16 13 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 14 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 15 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 16 C 0.07 2.97 2.14 44.18 0.09 3.06 16 17 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 18 C 0.50 20.35 5.85 71.24 0.42 20.77 16 19 O -0.53 -24.20 14.87 21.97 0.33 -23.87 16 20 O -0.52 -17.03 13.42 -51.36 -0.69 -17.72 16 21 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 1.98 5.69 -2.39 -0.01 1.97 16 23 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 2.47 7.13 -2.39 -0.02 2.46 16 27 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.32 12.13 8.89 -89.69 -0.80 11.33 16 29 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.42 9.57 9.10 -74.06 -0.67 8.90 16 Total: -1.00 -67.35 248.43 -1.60 -68.95 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -0.31 Total: 15.08 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 3.46 Total: 16.68 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -6.41 Total: -106.76 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.36 Total: -41.59 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -67.35 -1.60 -68.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259388516.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.621 kcal (2) G-P(sol) polarization free energy of solvation -67.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds