Wall clock time and date at job start Mon Mar 30 2020 02:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46954 * 111.00195 * 2 1 4 4 C 1.53048 * 109.36807 * 183.18695 * 3 2 1 5 5 N 1.46956 * 109.38369 * 301.60971 * 4 3 2 6 6 C 1.46958 * 110.87968 * 59.28425 * 5 4 3 7 7 H 1.08991 * 109.48831 * 60.69329 * 6 5 4 8 8 C 1.50698 * 109.48614 * 180.73854 * 6 5 4 9 9 H 1.08005 * 119.99819 * 119.95825 * 8 6 5 10 10 C 1.37875 * 120.00046 * 299.95166 * 8 6 5 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 C 1.46955 * 110.99857 * 123.79594 * 2 1 3 17 17 H 1.09000 * 109.50984 * 296.78846 * 16 2 1 18 18 C 1.50704 * 109.49187 * 56.84608 * 16 2 1 19 19 O 1.20830 * 119.99258 * 19.88703 * 18 16 2 20 20 O 1.34220 * 120.00178 * 199.89172 * 18 16 2 21 21 H 1.09005 * 109.47453 * 296.20397 * 1 2 3 22 22 H 1.09004 * 109.47259 * 56.20423 * 1 2 3 23 23 H 1.08997 * 109.47085 * 176.20344 * 1 2 3 24 24 H 1.09000 * 109.48720 * 303.15330 * 3 2 1 25 25 H 1.09000 * 109.49198 * 63.19144 * 3 2 1 26 26 H 1.09000 * 109.49083 * 61.56613 * 4 3 2 27 27 H 1.08994 * 109.48980 * 181.60595 * 4 3 2 28 28 H 1.00900 * 110.97873 * 295.43232 * 5 4 3 29 29 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 30 30 H 0.96702 * 117.00248 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0505 0.5657 1.0595 6 6 3.5234 -0.8061 1.0598 7 1 3.8253 -1.3118 0.1428 8 6 4.0686 -1.5538 2.2493 9 1 3.3932 -1.9588 2.9884 10 6 5.4295 -1.7209 2.3938 11 7 6.2519 -1.2274 1.4941 12 14 6.1053 -2.6484 3.8678 13 1 7.5878 -2.6883 3.7905 14 1 5.5717 -4.0342 3.8678 15 1 5.6937 -1.9595 5.1174 16 6 1.9956 -0.7631 1.1401 17 1 1.6937 -0.2823 2.0706 18 6 1.4504 -2.1675 1.1000 19 8 1.0101 -2.6153 0.0678 20 8 1.4540 -2.9208 2.2109 21 1 -0.3634 0.4538 0.9221 22 1 -0.3634 0.5716 -0.8540 23 1 -0.3633 -1.0254 -0.0680 24 1 1.6013 1.9128 -0.8603 25 1 1.6934 1.8776 0.9171 26 1 3.8254 0.8479 -1.0106 27 1 3.9177 2.3448 -0.0517 28 1 3.8471 1.0314 1.9312 29 1 5.9011 -0.7461 0.7284 30 1 1.0943 -3.8153 2.1360 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259388519.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:07 Heat of formation + Delta-G solvation = -76.589465 kcal Electronic energy + Delta-G solvation = -15367.566488 eV Core-core repulsion = 12776.954726 eV Total energy + Delta-G solvation = -2590.611762 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06490 -38.02085 -35.49577 -34.15644 -32.30639 -30.37914 -27.10125 -25.03510 -24.02909 -21.78870 -21.22236 -19.54949 -17.53313 -17.06838 -16.02765 -15.39491 -14.69006 -14.57455 -14.32887 -13.65122 -13.53484 -13.18323 -12.71801 -12.27541 -11.98090 -11.65583 -11.27194 -11.06640 -10.78280 -10.74813 -10.58612 -10.22336 -10.01572 -9.81438 -8.56169 -8.34627 -8.10077 -7.38611 -6.21842 -4.05774 2.87473 3.47893 3.49546 3.51293 3.68617 4.34546 4.60645 5.14399 5.34442 5.45134 5.54714 5.62410 5.74365 5.79360 5.84342 5.91600 6.08855 6.11486 6.15382 6.54936 6.94599 7.09746 7.26587 7.35326 7.85151 8.16472 8.48640 8.56584 8.68513 8.99748 9.77858 11.18277 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031605 B = 0.013187 C = 0.010013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.710564 B = 2122.836006 C = 2795.803859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.525 5.525 3 C 0.024 3.976 4 C 0.050 3.950 5 N -0.663 5.663 6 C 0.225 3.775 7 H 0.044 0.956 8 C -0.623 4.623 9 H 0.064 0.936 10 C 0.040 3.960 11 N -0.888 5.888 12 Si 1.066 2.934 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.289 1.289 16 C 0.072 3.928 17 H 0.061 0.939 18 C 0.507 3.493 19 O -0.524 6.524 20 O -0.500 6.500 21 H 0.016 0.984 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.329 0.671 29 H 0.290 0.710 30 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 2.854 0.402 9.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.251 5.251 3 C -0.105 4.105 4 C -0.080 4.080 5 N -0.292 5.292 6 C 0.116 3.884 7 H 0.062 0.938 8 C -0.662 4.662 9 H 0.083 0.917 10 C -0.171 4.171 11 N -0.521 5.521 12 Si 0.895 3.105 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.216 1.216 16 C -0.039 4.039 17 H 0.079 0.921 18 C 0.349 3.651 19 O -0.413 6.413 20 O -0.309 6.309 21 H 0.035 0.965 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.147 0.853 29 H 0.103 0.897 30 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -6.554 2.240 0.094 6.927 hybrid contribution -3.081 0.554 0.207 3.137 sum -9.635 2.794 0.302 10.036 Atomic orbital electron populations 1.22555 0.88052 1.03079 0.99652 1.61873 1.07258 1.13421 1.42549 1.22942 0.99273 0.88206 1.00111 1.22180 0.89684 0.98543 0.97629 1.61331 1.60461 1.03490 1.03932 1.19361 0.81955 0.87414 0.99624 0.93804 1.21918 0.95015 1.39486 1.09790 0.91740 1.25628 0.93336 0.96312 1.01783 1.70562 1.38524 1.31523 1.11517 0.83605 0.76048 0.75868 0.74965 1.21013 1.21634 1.21577 1.22263 1.01885 0.87612 0.92148 0.92142 1.22994 0.73223 0.88475 0.80366 1.90605 1.44557 1.73784 1.32383 1.84680 1.77288 1.29779 1.39150 0.96500 0.91502 0.90408 0.90749 0.95421 0.90821 0.91345 0.85261 0.89724 0.74715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.14 60.06 0.55 0.79 16 2 N -0.53 -10.05 4.52 -236.12 -1.07 -11.12 16 3 C 0.02 0.40 5.62 -3.77 -0.02 0.38 16 4 C 0.05 0.92 6.72 -3.77 -0.03 0.90 16 5 N -0.66 -14.80 5.13 -107.82 -0.55 -15.35 16 6 C 0.22 5.49 1.57 -68.80 -0.11 5.38 16 7 H 0.04 1.24 8.01 -51.93 -0.42 0.82 16 8 C -0.62 -16.65 8.02 -34.44 -0.28 -16.93 16 9 H 0.06 1.72 6.27 -52.48 -0.33 1.39 16 10 C 0.04 1.11 5.39 -17.82 -0.10 1.01 16 11 N -0.89 -26.23 13.51 55.43 0.75 -25.49 16 12 Si 1.07 24.68 29.90 -169.99 -5.08 19.60 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 16 C 0.07 1.54 1.94 -68.80 -0.13 1.40 16 17 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 18 C 0.51 10.76 6.39 36.01 0.23 10.99 16 19 O -0.52 -11.81 15.50 -18.75 -0.29 -12.10 16 20 O -0.50 -9.38 11.75 -39.23 -0.46 -9.84 16 21 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 22 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 23 H 0.08 1.37 5.84 -51.93 -0.30 1.07 16 24 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.33 7.16 8.79 -39.29 -0.35 6.81 16 29 H 0.29 8.63 6.40 -40.82 -0.26 8.37 16 30 H 0.40 5.31 9.10 45.56 0.41 5.72 16 LS Contribution 247.81 15.07 3.73 3.73 Total: -1.00 -31.38 247.81 -5.85 -37.23 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -2.99 Total: 9.40 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 0.12 Total: 3.93 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.87 Total: -51.96 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.75 Total: -21.94 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.08 Total: 19.60 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.38 -5.85 -37.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259388519.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.359 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds