Wall clock time and date at job start Mon Mar 30 2020 02:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46954 * 111.00195 * 2 1 4 4 C 1.53048 * 109.36807 * 183.18695 * 3 2 1 5 5 N 1.46956 * 109.38369 * 301.60971 * 4 3 2 6 6 C 1.46958 * 110.87968 * 59.28425 * 5 4 3 7 7 H 1.08991 * 109.48831 * 60.69329 * 6 5 4 8 8 C 1.50698 * 109.48614 * 180.73854 * 6 5 4 9 9 H 1.08005 * 119.99819 * 119.95825 * 8 6 5 10 10 C 1.37875 * 120.00046 * 299.95166 * 8 6 5 11 11 N 1.31511 * 120.00192 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47297 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00310 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00304 * 12 10 8 16 16 C 1.46955 * 110.99857 * 123.79594 * 2 1 3 17 17 H 1.09000 * 109.50984 * 296.78846 * 16 2 1 18 18 C 1.50704 * 109.49187 * 56.84608 * 16 2 1 19 19 O 1.20830 * 119.99258 * 19.88703 * 18 16 2 20 20 O 1.34220 * 120.00178 * 199.89172 * 18 16 2 21 21 H 1.09005 * 109.47453 * 296.20397 * 1 2 3 22 22 H 1.09004 * 109.47259 * 56.20423 * 1 2 3 23 23 H 1.08997 * 109.47085 * 176.20344 * 1 2 3 24 24 H 1.09000 * 109.48720 * 303.15330 * 3 2 1 25 25 H 1.09000 * 109.49198 * 63.19144 * 3 2 1 26 26 H 1.09000 * 109.49083 * 61.56613 * 4 3 2 27 27 H 1.08994 * 109.48980 * 181.60595 * 4 3 2 28 28 H 1.00900 * 110.97873 * 295.43232 * 5 4 3 29 29 H 0.97001 * 119.99934 * 359.97438 * 11 10 8 30 30 H 0.96702 * 117.00248 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0505 0.5657 1.0595 6 6 3.5234 -0.8061 1.0598 7 1 3.8253 -1.3118 0.1428 8 6 4.0686 -1.5538 2.2493 9 1 3.3932 -1.9588 2.9884 10 6 5.4295 -1.7209 2.3938 11 7 6.2519 -1.2274 1.4941 12 14 6.1053 -2.6484 3.8678 13 1 7.5878 -2.6883 3.7905 14 1 5.5717 -4.0342 3.8678 15 1 5.6937 -1.9595 5.1174 16 6 1.9956 -0.7631 1.1401 17 1 1.6937 -0.2823 2.0706 18 6 1.4504 -2.1675 1.1000 19 8 1.0101 -2.6153 0.0678 20 8 1.4540 -2.9208 2.2109 21 1 -0.3634 0.4538 0.9221 22 1 -0.3634 0.5716 -0.8540 23 1 -0.3633 -1.0254 -0.0680 24 1 1.6013 1.9128 -0.8603 25 1 1.6934 1.8776 0.9171 26 1 3.8254 0.8479 -1.0106 27 1 3.9177 2.3448 -0.0517 28 1 3.8471 1.0314 1.9312 29 1 5.9011 -0.7461 0.7284 30 1 1.0943 -3.8153 2.1360 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259388519.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:07 Heat of formation + Delta-G solvation = -102.336770 kcal Electronic energy + Delta-G solvation = -15368.682975 eV Core-core repulsion = 12776.954726 eV Total energy + Delta-G solvation = -2591.728249 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.68946 -39.60837 -37.12000 -35.88783 -34.09657 -32.13870 -28.55208 -26.97683 -25.56159 -23.60233 -22.78921 -21.16700 -19.19619 -18.98575 -17.63454 -17.05549 -16.33014 -16.09222 -15.83220 -15.49898 -15.19117 -14.74207 -14.39154 -13.80312 -13.55968 -13.17763 -12.90639 -12.73140 -12.51027 -12.33306 -12.21888 -12.01460 -11.84598 -11.46125 -10.54991 -10.44004 -9.55803 -9.07678 -8.35574 -6.22628 1.20250 1.61569 1.68811 1.87539 2.02833 2.65796 2.91339 3.30084 3.77671 3.95346 4.01671 4.15198 4.18771 4.31195 4.43119 4.49354 4.64113 4.70944 4.85638 5.03974 5.09885 5.58604 5.76003 5.88645 6.01233 6.24937 6.54500 6.78285 6.84708 7.09397 7.68796 9.00373 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031605 B = 0.013187 C = 0.010013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.710564 B = 2122.836006 C = 2795.803859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.545 5.545 3 C 0.029 3.971 4 C 0.051 3.949 5 N -0.680 5.680 6 C 0.232 3.768 7 H -0.005 1.005 8 C -0.626 4.626 9 H 0.065 0.935 10 C -0.009 4.009 11 N -0.920 5.920 12 Si 1.111 2.889 13 H -0.292 1.292 14 H -0.276 1.276 15 H -0.270 1.270 16 C 0.077 3.923 17 H 0.064 0.936 18 C 0.505 3.495 19 O -0.542 6.542 20 O -0.500 6.500 21 H 0.032 0.968 22 H 0.092 0.908 23 H 0.061 0.939 24 H 0.105 0.895 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.333 0.667 29 H 0.277 0.723 30 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.997 3.535 1.186 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.272 5.272 3 C -0.099 4.099 4 C -0.079 4.079 5 N -0.309 5.309 6 C 0.123 3.877 7 H 0.013 0.987 8 C -0.665 4.665 9 H 0.083 0.917 10 C -0.213 4.213 11 N -0.555 5.555 12 Si 0.935 3.065 13 H -0.218 1.218 14 H -0.202 1.202 15 H -0.196 1.196 16 C -0.034 4.034 17 H 0.082 0.918 18 C 0.348 3.652 19 O -0.433 6.433 20 O -0.312 6.312 21 H 0.050 0.950 22 H 0.110 0.890 23 H 0.079 0.921 24 H 0.123 0.877 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.151 0.849 29 H 0.088 0.912 30 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -7.808 2.917 0.886 8.382 hybrid contribution -2.761 0.343 -0.081 2.784 sum -10.569 3.259 0.805 11.089 Atomic orbital electron populations 1.22555 0.86093 1.02715 1.01553 1.61858 1.09116 1.14648 1.41537 1.22935 0.97506 0.87327 1.02154 1.22227 0.91461 0.99092 0.95090 1.61035 1.61566 1.03001 1.05281 1.18950 0.84262 0.88123 0.96341 0.98699 1.22215 0.95056 1.39169 1.10036 0.91686 1.26944 0.94315 0.96580 1.03429 1.70676 1.38931 1.33578 1.12277 0.83013 0.75060 0.75608 0.72867 1.21754 1.20212 1.19574 1.22007 0.99760 0.88352 0.93296 0.91833 1.23051 0.72890 0.88739 0.80498 1.90591 1.45425 1.74209 1.33068 1.84610 1.77109 1.31353 1.38097 0.94953 0.88984 0.92058 0.87684 0.94000 0.92758 0.88461 0.84874 0.91180 0.72052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.14 127.69 1.17 1.72 16 2 N -0.55 -19.94 4.52 -900.96 -4.07 -24.02 16 3 C 0.03 0.90 5.62 86.31 0.48 1.38 16 4 C 0.05 1.82 6.72 86.31 0.58 2.40 16 5 N -0.68 -30.29 5.13 -495.02 -2.54 -32.83 16 6 C 0.23 11.48 1.57 44.18 0.07 11.55 16 7 H 0.00 -0.29 8.01 -2.39 -0.02 -0.31 16 8 C -0.63 -33.50 8.02 25.60 0.21 -33.29 16 9 H 0.07 3.41 6.27 -2.91 -0.02 3.39 16 10 C -0.01 -0.48 5.39 84.65 0.46 -0.03 16 11 N -0.92 -55.37 13.51 21.45 0.29 -55.08 16 12 Si 1.11 49.33 29.90 68.60 2.05 51.38 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 16 C 0.08 3.24 1.94 44.18 0.09 3.32 16 17 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 18 C 0.51 21.10 6.39 71.24 0.46 21.56 16 19 O -0.54 -24.19 15.50 21.95 0.34 -23.85 16 20 O -0.50 -18.09 11.75 -51.32 -0.60 -18.70 16 21 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 22 H 0.09 2.29 8.13 -2.38 -0.02 2.27 16 23 H 0.06 2.06 5.84 -2.39 -0.01 2.04 16 24 H 0.10 2.60 8.13 -2.39 -0.02 2.59 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.33 14.26 8.79 -89.69 -0.79 13.47 16 29 H 0.28 17.00 6.40 -92.71 -0.59 16.41 16 30 H 0.42 10.53 9.10 -74.06 -0.67 9.85 16 Total: -1.00 -67.82 247.81 -1.15 -68.97 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.12 Total: 25.52 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 3.50 Total: 8.61 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -6.32 Total: -111.94 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.26 Total: -42.55 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.05 Total: 51.38 kcal Total: -67.82 -1.15 -68.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259388519.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.363 kcal (2) G-P(sol) polarization free energy of solvation -67.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds