Wall clock time and date at job start Mon Mar 30 2020 02:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46957 * 110.99737 * 2 1 4 4 C 1.53056 * 109.36209 * 176.81017 * 3 2 1 5 5 N 1.46953 * 109.36257 * 58.40114 * 4 3 2 6 6 C 1.46954 * 110.88660 * 300.68057 * 5 4 3 7 7 H 1.09005 * 109.48558 * 299.33248 * 6 5 4 8 8 C 1.50694 * 109.49346 * 179.28690 * 6 5 4 9 9 H 1.08000 * 120.00563 * 240.04181 * 8 6 5 10 10 C 1.37885 * 119.99902 * 60.04344 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.46955 * 110.99814 * 236.17906 * 2 1 3 17 17 H 1.09000 * 109.47534 * 63.21045 * 16 2 1 18 18 C 1.50697 * 109.50885 * 303.14539 * 16 2 1 19 19 O 1.20829 * 120.00171 * 340.09765 * 18 16 2 20 20 O 1.34233 * 120.00365 * 160.10070 * 18 16 2 21 21 H 1.09003 * 109.46972 * 63.95659 * 1 2 3 22 22 H 1.09007 * 109.47280 * 183.95012 * 1 2 3 23 23 H 1.08997 * 109.47343 * 303.95238 * 1 2 3 24 24 H 1.08998 * 109.48682 * 56.84519 * 3 2 1 25 25 H 1.08995 * 109.50704 * 296.78968 * 3 2 1 26 26 H 1.08998 * 109.48858 * 298.43337 * 4 3 2 27 27 H 1.08999 * 109.50494 * 178.38067 * 4 3 2 28 28 H 1.00907 * 110.99992 * 176.80709 * 5 4 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 30 30 H 0.96696 * 117.00677 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0500 0.5659 -1.0597 6 6 3.5234 -0.8060 -1.0598 7 1 3.8257 -1.3116 -0.1426 8 6 4.0686 -1.5538 -2.2492 9 1 3.3933 -1.9592 -2.9881 10 6 5.4296 -1.7205 -2.3940 11 7 6.2520 -1.2265 -1.4944 12 14 6.1053 -2.6481 -3.8679 13 1 6.2146 -4.0916 -3.5368 14 1 5.1906 -2.4733 -5.0246 15 1 7.4482 -2.1166 -4.2140 16 6 1.9956 -0.7636 -1.1398 17 1 1.6934 -0.2827 -2.0701 18 6 1.4508 -2.1681 -1.0994 19 8 1.0108 -2.6160 -0.0670 20 8 1.4544 -2.9217 -2.2102 21 1 -0.3633 0.4512 -0.9234 22 1 -0.3634 -1.0253 0.0708 23 1 -0.3634 0.5739 0.8524 24 1 1.6012 1.9128 0.8603 25 1 1.6937 1.8777 -0.9171 26 1 3.8253 0.8480 1.0106 27 1 3.9180 2.3448 0.0515 28 1 5.0591 0.5660 -1.0597 29 1 7.2095 -1.3442 -1.5961 30 1 1.0950 -3.8163 -2.1351 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259388524.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:11 Heat of formation + Delta-G solvation = -75.519133 kcal Electronic energy + Delta-G solvation = -15314.272866 eV Core-core repulsion = 12723.707518 eV Total energy + Delta-G solvation = -2590.565349 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.90646 -37.71754 -35.40826 -34.02178 -32.18194 -30.46889 -27.11091 -25.59930 -23.87434 -21.78578 -20.99464 -18.80530 -17.48810 -16.74553 -15.97282 -15.32662 -14.67295 -14.43277 -14.19578 -13.61490 -13.53488 -13.16562 -12.67153 -12.25744 -11.69689 -11.63956 -11.36006 -10.98734 -10.74286 -10.71538 -10.66435 -10.39748 -9.75374 -9.47026 -9.19663 -8.64437 -7.87513 -7.03662 -6.16306 -4.19125 2.94243 3.28595 3.35032 3.39738 3.61148 4.34967 4.59930 5.10120 5.50953 5.60816 5.68129 5.82391 5.94304 5.98235 6.01071 6.20237 6.20895 6.26478 6.57951 6.63227 7.14084 7.25498 7.47702 7.49655 7.85150 7.97984 8.49632 8.68350 8.91657 8.96195 9.49183 10.94883 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031588 B = 0.013109 C = 0.009948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.187008 B = 2135.449850 C = 2814.063218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.530 5.530 3 C 0.066 3.934 4 C 0.050 3.950 5 N -0.683 5.683 6 C 0.233 3.767 7 H 0.011 0.989 8 C -0.512 4.512 9 H 0.077 0.923 10 C 0.068 3.932 11 N -0.901 5.901 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.271 1.271 15 H -0.287 1.287 16 C 0.104 3.896 17 H 0.071 0.929 18 C 0.504 3.496 19 O -0.523 6.523 20 O -0.502 6.502 21 H 0.018 0.982 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.026 0.974 27 H 0.063 0.937 28 H 0.370 0.630 29 H 0.265 0.735 30 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 2.271 0.161 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.256 5.256 3 C -0.062 4.062 4 C -0.081 4.081 5 N -0.322 5.322 6 C 0.125 3.875 7 H 0.029 0.971 8 C -0.551 4.551 9 H 0.095 0.905 10 C -0.133 4.133 11 N -0.540 5.540 12 Si 0.732 3.268 13 H -0.208 1.208 14 H -0.196 1.196 15 H -0.212 1.212 16 C -0.005 4.005 17 H 0.088 0.912 18 C 0.346 3.654 19 O -0.412 6.412 20 O -0.311 6.311 21 H 0.037 0.963 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.195 0.805 29 H 0.075 0.925 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.359 2.579 0.435 7.810 hybrid contribution 0.408 -1.032 -0.592 1.258 sum -6.951 1.547 -0.157 7.123 Atomic orbital electron populations 1.22530 0.88136 1.02918 0.99710 1.61869 1.07108 1.13879 1.42724 1.22150 0.96239 0.87881 0.99922 1.21946 0.93295 0.98301 0.94534 1.60940 1.16681 1.15114 1.39416 1.18925 0.83934 0.87188 0.97458 0.97109 1.21281 0.92211 1.33317 1.08300 0.90530 1.24981 0.96880 0.95106 0.96381 1.69672 1.03441 1.46156 1.34772 0.86398 0.78147 0.79586 0.82677 1.20759 1.19615 1.21244 1.21500 0.99647 0.86630 0.92769 0.91164 1.23201 0.73363 0.88552 0.80273 1.90601 1.44543 1.73692 1.32345 1.84680 1.77344 1.29761 1.39311 0.96333 0.90583 0.91603 0.91090 0.94475 0.95607 0.91850 0.80486 0.92466 0.74768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.14 60.06 0.55 0.80 16 2 N -0.53 -10.59 4.52 -236.13 -1.07 -11.65 16 3 C 0.07 1.18 5.62 -3.76 -0.02 1.16 16 4 C 0.05 0.99 6.72 -3.77 -0.03 0.97 16 5 N -0.68 -16.27 6.53 -107.81 -0.70 -16.98 16 6 C 0.23 5.92 2.06 -68.81 -0.14 5.78 16 7 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 8 C -0.51 -13.70 8.10 -34.44 -0.28 -13.98 16 9 H 0.08 2.02 6.27 -52.49 -0.33 1.69 16 10 C 0.07 1.84 5.35 -17.82 -0.10 1.74 16 11 N -0.90 -24.81 11.49 55.43 0.64 -24.18 16 12 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.10 2.30 1.95 -68.81 -0.13 2.17 16 17 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 18 C 0.50 10.75 6.39 36.00 0.23 10.98 16 19 O -0.52 -11.80 15.50 -18.75 -0.29 -12.09 16 20 O -0.50 -9.31 11.75 -39.27 -0.46 -9.78 16 21 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 22 H 0.08 1.35 5.85 -51.93 -0.30 1.05 16 23 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 24 H 0.07 1.08 8.13 -51.93 -0.42 0.65 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.37 9.46 6.72 -39.29 -0.26 9.20 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 30 H 0.40 5.19 9.10 45.56 0.41 5.60 16 LS Contribution 247.34 15.07 3.73 3.73 Total: -1.00 -30.14 247.34 -6.10 -36.23 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.00 Total: 9.19 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 0.08 Total: 9.62 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -1.13 Total: -52.81 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.75 Total: -21.87 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.14 -6.10 -36.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259388524.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.286 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds