Wall clock time and date at job start Mon Mar 30 2020 02:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46957 * 110.99737 * 2 1 4 4 C 1.53056 * 109.36209 * 176.81017 * 3 2 1 5 5 N 1.46953 * 109.36257 * 58.40114 * 4 3 2 6 6 C 1.46954 * 110.88660 * 300.68057 * 5 4 3 7 7 H 1.09005 * 109.48558 * 299.33248 * 6 5 4 8 8 C 1.50694 * 109.49346 * 179.28690 * 6 5 4 9 9 H 1.08000 * 120.00563 * 240.04181 * 8 6 5 10 10 C 1.37885 * 119.99902 * 60.04344 * 8 6 5 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.46955 * 110.99814 * 236.17906 * 2 1 3 17 17 H 1.09000 * 109.47534 * 63.21045 * 16 2 1 18 18 C 1.50697 * 109.50885 * 303.14539 * 16 2 1 19 19 O 1.20829 * 120.00171 * 340.09765 * 18 16 2 20 20 O 1.34233 * 120.00365 * 160.10070 * 18 16 2 21 21 H 1.09003 * 109.46972 * 63.95659 * 1 2 3 22 22 H 1.09007 * 109.47280 * 183.95012 * 1 2 3 23 23 H 1.08997 * 109.47343 * 303.95238 * 1 2 3 24 24 H 1.08998 * 109.48682 * 56.84519 * 3 2 1 25 25 H 1.08995 * 109.50704 * 296.78968 * 3 2 1 26 26 H 1.08998 * 109.48858 * 298.43337 * 4 3 2 27 27 H 1.08999 * 109.50494 * 178.38067 * 4 3 2 28 28 H 1.00907 * 110.99992 * 176.80709 * 5 4 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 30 30 H 0.96696 * 117.00677 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0500 0.5659 -1.0597 6 6 3.5234 -0.8060 -1.0598 7 1 3.8257 -1.3116 -0.1426 8 6 4.0686 -1.5538 -2.2492 9 1 3.3933 -1.9592 -2.9881 10 6 5.4296 -1.7205 -2.3940 11 7 6.2520 -1.2265 -1.4944 12 14 6.1053 -2.6481 -3.8679 13 1 6.2146 -4.0916 -3.5368 14 1 5.1906 -2.4733 -5.0246 15 1 7.4482 -2.1166 -4.2140 16 6 1.9956 -0.7636 -1.1398 17 1 1.6934 -0.2827 -2.0701 18 6 1.4508 -2.1681 -1.0994 19 8 1.0108 -2.6160 -0.0670 20 8 1.4544 -2.9217 -2.2102 21 1 -0.3633 0.4512 -0.9234 22 1 -0.3634 -1.0253 0.0708 23 1 -0.3634 0.5739 0.8524 24 1 1.6012 1.9128 0.8603 25 1 1.6937 1.8777 -0.9171 26 1 3.8253 0.8480 1.0106 27 1 3.9180 2.3448 0.0515 28 1 5.0591 0.5660 -1.0597 29 1 7.2095 -1.3442 -1.5961 30 1 1.0950 -3.8163 -2.1351 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259388524.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:10 Heat of formation + Delta-G solvation = -100.471085 kcal Electronic energy + Delta-G solvation = -15315.354864 eV Core-core repulsion = 12723.707518 eV Total energy + Delta-G solvation = -2591.647346 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = -0.13 seconds Orbital eigenvalues (eV) -41.55188 -39.33864 -37.03683 -35.79046 -34.01399 -32.25127 -28.61749 -27.53216 -25.45031 -23.56223 -22.60418 -20.48813 -19.14341 -18.62712 -17.70261 -17.07445 -16.42569 -16.06894 -15.81553 -15.27855 -15.11934 -14.81663 -14.45652 -13.92489 -13.27539 -13.21224 -12.92431 -12.80805 -12.45355 -12.43234 -12.25618 -12.10015 -11.56775 -11.16106 -11.12249 -10.66965 -9.37635 -8.93418 -8.19048 -6.29270 1.25579 1.45954 1.47170 1.58232 2.10050 2.43866 3.05592 3.11922 3.95533 4.10962 4.18640 4.21116 4.39826 4.51056 4.54861 4.62468 4.69989 4.94510 4.98861 5.05264 5.28844 5.65428 5.78949 5.85210 5.99168 6.13658 6.56868 6.88881 7.00122 7.15857 7.42433 8.91439 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031588 B = 0.013109 C = 0.009948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.187008 B = 2135.449850 C = 2814.063218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.549 5.549 3 C 0.069 3.931 4 C 0.046 3.954 5 N -0.688 5.688 6 C 0.238 3.762 7 H -0.041 1.041 8 C -0.529 4.529 9 H 0.077 0.923 10 C 0.022 3.978 11 N -0.925 5.925 12 Si 0.967 3.033 13 H -0.279 1.279 14 H -0.265 1.265 15 H -0.284 1.284 16 C 0.108 3.892 17 H 0.069 0.931 18 C 0.505 3.495 19 O -0.540 6.540 20 O -0.500 6.500 21 H 0.034 0.966 22 H 0.062 0.938 23 H 0.092 0.908 24 H 0.106 0.894 25 H 0.045 0.955 26 H 0.008 0.992 27 H 0.091 0.909 28 H 0.356 0.644 29 H 0.266 0.734 30 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.268 2.755 -0.483 8.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.276 5.276 3 C -0.058 4.058 4 C -0.084 4.084 5 N -0.324 5.324 6 C 0.129 3.871 7 H -0.023 1.023 8 C -0.567 4.567 9 H 0.095 0.905 10 C -0.178 4.178 11 N -0.566 5.566 12 Si 0.792 3.208 13 H -0.205 1.205 14 H -0.189 1.189 15 H -0.209 1.209 16 C -0.002 4.002 17 H 0.087 0.913 18 C 0.348 3.652 19 O -0.430 6.430 20 O -0.312 6.312 21 H 0.052 0.948 22 H 0.080 0.920 23 H 0.111 0.889 24 H 0.124 0.876 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.110 0.890 28 H 0.179 0.821 29 H 0.076 0.924 30 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -8.362 3.055 -0.217 8.905 hybrid contribution 0.696 -1.181 -0.355 1.416 sum -7.666 1.874 -0.572 7.913 Atomic orbital electron populations 1.22549 0.85901 1.02766 1.01682 1.61872 1.09226 1.14807 1.41695 1.22227 0.94422 0.87298 1.01892 1.22127 0.95175 0.98839 0.92247 1.60933 1.15739 1.14417 1.41329 1.18698 0.86351 0.87445 0.94574 1.02309 1.21554 0.92642 1.33846 1.08685 0.90473 1.25762 0.97215 0.95939 0.98866 1.69790 1.03592 1.46988 1.36214 0.85425 0.77513 0.78235 0.79629 1.20501 1.18892 1.20920 1.21282 0.97514 0.87740 0.93689 0.91322 1.23091 0.73019 0.88605 0.80480 1.90588 1.45376 1.74053 1.33001 1.84607 1.77127 1.31360 1.38083 0.94782 0.91962 0.88924 0.87572 0.93652 0.97392 0.89038 0.82126 0.92435 0.71978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.14 127.69 1.17 1.74 16 2 N -0.55 -21.15 4.52 -900.97 -4.07 -25.23 16 3 C 0.07 2.30 5.62 86.31 0.49 2.79 16 4 C 0.05 1.80 6.72 86.31 0.58 2.38 16 5 N -0.69 -32.99 6.53 -495.02 -3.23 -36.22 16 6 C 0.24 12.28 2.06 44.17 0.09 12.37 16 7 H -0.04 -2.45 8.14 -2.38 -0.02 -2.47 16 8 C -0.53 -28.47 8.10 25.60 0.21 -28.26 16 9 H 0.08 4.05 6.27 -2.91 -0.02 4.03 16 10 C 0.02 1.16 5.35 84.66 0.45 1.61 16 11 N -0.93 -51.80 11.49 21.45 0.25 -51.56 16 12 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 C 0.11 4.72 1.95 44.18 0.09 4.81 16 17 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 18 C 0.51 21.29 6.39 71.24 0.46 21.75 16 19 O -0.54 -24.12 15.50 21.95 0.34 -23.78 16 20 O -0.50 -17.97 11.75 -51.45 -0.60 -18.58 16 21 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 2.10 5.85 -2.38 -0.01 2.09 16 23 H 0.09 2.34 8.13 -2.39 -0.02 2.32 16 24 H 0.11 2.82 8.13 -2.39 -0.02 2.80 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.36 18.58 6.72 -89.69 -0.60 17.98 16 29 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.42 10.30 9.10 -74.06 -0.67 9.62 16 Total: -1.00 -64.81 247.34 -1.89 -66.70 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.11 Total: 24.71 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 3.52 Total: 19.17 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -7.06 Total: -113.01 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.26 Total: -42.36 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -64.81 -1.89 -66.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259388524.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.772 kcal (2) G-P(sol) polarization free energy of solvation -64.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.13 seconds