Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47334 * 2 1 4 4 C 1.52999 * 110.38890 * 180.89666 * 3 2 1 5 5 C 1.53002 * 109.46965 * 305.06143 * 4 3 2 6 6 C 1.53708 * 110.34185 * 303.12711 * 3 2 1 7 7 C 1.52940 * 112.48885 * 121.69874 * 6 3 2 8 8 H 1.08999 * 109.60369 * 89.64558 * 7 6 3 9 9 C 1.50702 * 109.60052 * 209.96859 * 7 6 3 10 10 H 1.08001 * 120.00190 * 359.97438 * 9 7 6 11 11 C 1.37879 * 120.00077 * 180.27384 * 9 7 6 12 12 N 1.31517 * 119.99642 * 359.72404 * 11 9 7 13 13 Si 1.86796 * 120.00008 * 179.72359 * 11 9 7 14 14 H 1.48502 * 109.47186 * 90.00253 * 13 11 9 15 15 H 1.48503 * 109.46760 * 209.99796 * 13 11 9 16 16 H 1.48497 * 109.47134 * 329.99886 * 13 11 9 17 17 C 1.55159 * 108.96114 * 329.89323 * 7 6 3 18 18 S 1.83397 * 110.33717 * 58.67218 * 3 2 1 19 19 H 1.09004 * 109.46730 * 300.40003 * 1 2 3 20 20 H 1.09000 * 109.47331 * 60.40125 * 1 2 3 21 21 H 1.08996 * 109.47061 * 180.40386 * 1 2 3 22 22 H 1.09005 * 109.46855 * 240.00144 * 2 1 3 23 23 H 1.09000 * 109.47028 * 120.00428 * 2 1 3 24 24 H 1.08996 * 109.47009 * 65.05760 * 4 3 2 25 25 H 1.08995 * 109.47157 * 185.06426 * 4 3 2 26 26 H 1.08997 * 109.47621 * 305.87379 * 5 4 3 27 27 H 1.09000 * 109.47001 * 65.88180 * 5 4 3 28 28 H 1.09006 * 109.47237 * 185.87461 * 5 4 3 29 29 H 1.09000 * 108.88715 * 0.90108 * 6 3 2 30 30 H 1.09001 * 108.88218 * 242.48554 * 6 3 2 31 31 H 0.97002 * 119.99949 * 179.97438 * 12 11 9 32 32 H 1.08997 * 111.12665 * 159.34824 * 17 7 6 33 33 H 1.08996 * 111.13548 * 283.53337 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5697 1.4670 -0.0224 5 6 4.1101 0.6404 1.1462 6 6 1.4756 2.2088 -1.2070 7 6 0.6766 3.4455 -0.7931 8 1 1.3422 4.3062 -0.7286 9 6 -0.4012 3.7151 -1.8113 10 1 -0.5067 3.0687 -2.6701 11 6 -1.2488 4.7905 -1.6498 12 7 -1.1200 5.5779 -0.6043 13 14 -2.5798 5.1292 -2.9159 14 1 -3.8216 4.4104 -2.5330 15 1 -2.8498 6.5884 -2.9720 16 1 -2.1261 4.6580 -4.2491 17 6 0.0299 3.1871 0.5934 18 16 1.4096 2.3415 1.4689 19 1 -0.3633 0.5201 0.8864 20 1 -0.3634 0.5076 -0.8935 21 1 -0.3633 -1.0276 0.0072 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.9260 1.0444 -0.9618 25 1 3.9179 2.4958 0.0685 26 1 3.6714 0.9979 2.0777 27 1 3.8499 -0.4080 1.0007 28 1 5.1944 0.7425 1.1927 29 1 0.8262 1.5430 -1.7754 30 1 2.3025 2.5203 -1.8451 31 1 -1.7161 6.3348 -0.4908 32 1 -0.2321 4.1238 1.0854 33 1 -0.8389 2.5346 0.5064 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259546923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = -31.062985 kcal Electronic energy + Delta-G solvation = -13134.537610 eV Core-core repulsion = 11092.193239 eV Total energy + Delta-G solvation = -2042.344371 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.50560 -34.10392 -31.68352 -30.93675 -27.29102 -25.41222 -23.79013 -22.45794 -20.30288 -18.95842 -16.52321 -15.30563 -14.58116 -14.43945 -14.15615 -13.94614 -13.34682 -12.99782 -12.43252 -11.87010 -11.68807 -11.33776 -11.23709 -11.10741 -11.03975 -10.84479 -10.62323 -10.35092 -10.26689 -10.01098 -9.73746 -9.37323 -9.24600 -8.66899 -8.40910 -6.79797 -6.11455 -4.17532 2.83109 3.24227 3.32206 3.34606 3.50041 4.35393 5.15745 5.18492 5.23669 5.43657 5.56209 5.73584 5.80747 6.02839 6.09387 6.16670 6.21988 6.35018 6.37741 6.44231 6.51808 6.59293 6.68773 6.76716 6.83045 6.88364 7.03729 7.46478 7.69895 7.87555 8.24705 8.84750 9.47598 10.95892 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046334 B = 0.009458 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.163299 B = 2959.886490 C = 3072.201003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 C 0.001 3.999 4 C -0.099 4.099 5 C -0.151 4.151 6 C -0.114 4.114 7 C 0.048 3.952 8 H 0.038 0.962 9 C -0.514 4.514 10 H 0.059 0.941 11 C 0.064 3.936 12 N -0.887 5.887 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.017 4.017 18 S -0.369 6.369 19 H 0.068 0.932 20 H 0.065 0.935 21 H 0.043 0.957 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.106 0.894 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 -8.194 0.910 9.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.138 4.138 3 C -0.109 4.109 4 C -0.138 4.138 5 C -0.208 4.208 6 C -0.153 4.153 7 C 0.028 3.972 8 H 0.056 0.944 9 C -0.553 4.553 10 H 0.077 0.923 11 C -0.139 4.139 12 N -0.525 5.525 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.164 4.164 18 S -0.140 6.140 19 H 0.087 0.913 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.382 -7.988 2.189 9.878 hybrid contribution -1.191 0.294 -1.766 2.150 sum 4.192 -7.694 0.423 8.772 Atomic orbital electron populations 1.22013 0.95406 1.00584 1.03825 1.21634 0.96662 0.94452 1.01033 1.23203 0.96651 0.96365 0.94642 1.21552 0.92879 1.01049 0.98294 1.21833 0.99913 0.99811 0.99287 1.22323 0.99320 0.98243 0.95410 1.19458 0.94037 0.92480 0.91216 0.94397 1.21135 1.14872 1.11746 1.07581 0.92316 1.25009 0.97570 0.95732 0.95596 1.69915 1.38198 1.16391 1.27997 0.86559 0.82015 0.77466 0.81813 1.20587 1.21146 1.19854 1.24745 0.93601 1.00449 0.97650 1.87194 1.43585 1.60974 1.22261 0.91340 0.91624 0.93815 0.92286 0.91918 0.91875 0.91158 0.92015 0.92924 0.93293 0.91596 0.92644 0.92729 0.87548 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 8.66 37.16 0.32 -2.35 16 2 C -0.10 -1.56 4.52 -26.73 -0.12 -1.68 16 3 C 0.00 0.02 0.67 -90.25 -0.06 -0.04 16 4 C -0.10 -1.54 4.80 -26.73 -0.13 -1.67 16 5 C -0.15 -2.08 9.18 37.16 0.34 -1.74 16 6 C -0.11 -2.32 4.75 -26.39 -0.13 -2.45 16 7 C 0.05 1.17 2.45 -90.66 -0.22 0.95 16 8 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 9 C -0.51 -13.51 8.43 -34.44 -0.29 -13.80 16 10 H 0.06 1.52 7.54 -52.49 -0.40 1.13 16 11 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 12 N -0.89 -24.66 11.78 55.43 0.65 -24.00 16 13 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 C -0.02 -0.40 5.62 38.30 0.22 -0.19 16 18 S -0.37 -7.57 19.74 -107.50 -2.12 -9.69 16 19 H 0.07 1.24 5.98 -51.93 -0.31 0.93 16 20 H 0.06 1.18 6.29 -51.93 -0.33 0.86 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.94 6.63 -51.93 -0.34 0.60 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.06 0.94 7.14 -51.93 -0.37 0.57 16 27 H 0.05 0.67 6.80 -51.93 -0.35 0.31 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.33 5.48 -51.93 -0.28 1.05 16 30 H 0.05 1.08 7.62 -51.93 -0.40 0.69 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 32 H 0.11 2.76 7.09 -51.93 -0.37 2.39 16 33 H 0.07 1.63 6.92 -51.93 -0.36 1.27 16 LS Contribution 261.44 15.07 3.94 3.94 Total: -1.00 -26.62 261.44 -7.90 -34.51 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.18 Total: 0.93 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -0.16 Total: -21.35 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.65 Total: -24.00 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -2.12 Total: -9.69 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.62 -7.90 -34.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.449 kcal (2) G-P(sol) polarization free energy of solvation -26.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds