Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47334 * 2 1 4 4 C 1.52999 * 110.38890 * 180.89666 * 3 2 1 5 5 C 1.53002 * 109.46965 * 305.06143 * 4 3 2 6 6 C 1.53708 * 110.34185 * 303.12711 * 3 2 1 7 7 C 1.52940 * 112.48885 * 121.69874 * 6 3 2 8 8 H 1.08999 * 109.60369 * 89.64558 * 7 6 3 9 9 C 1.50702 * 109.60052 * 209.96859 * 7 6 3 10 10 H 1.08001 * 120.00190 * 359.97438 * 9 7 6 11 11 C 1.37879 * 120.00077 * 180.27384 * 9 7 6 12 12 N 1.31517 * 119.99642 * 359.72404 * 11 9 7 13 13 Si 1.86796 * 120.00008 * 179.72359 * 11 9 7 14 14 H 1.48502 * 109.47186 * 90.00253 * 13 11 9 15 15 H 1.48503 * 109.46760 * 209.99796 * 13 11 9 16 16 H 1.48497 * 109.47134 * 329.99886 * 13 11 9 17 17 C 1.55159 * 108.96114 * 329.89323 * 7 6 3 18 18 S 1.83397 * 110.33717 * 58.67218 * 3 2 1 19 19 H 1.09004 * 109.46730 * 300.40003 * 1 2 3 20 20 H 1.09000 * 109.47331 * 60.40125 * 1 2 3 21 21 H 1.08996 * 109.47061 * 180.40386 * 1 2 3 22 22 H 1.09005 * 109.46855 * 240.00144 * 2 1 3 23 23 H 1.09000 * 109.47028 * 120.00428 * 2 1 3 24 24 H 1.08996 * 109.47009 * 65.05760 * 4 3 2 25 25 H 1.08995 * 109.47157 * 185.06426 * 4 3 2 26 26 H 1.08997 * 109.47621 * 305.87379 * 5 4 3 27 27 H 1.09000 * 109.47001 * 65.88180 * 5 4 3 28 28 H 1.09006 * 109.47237 * 185.87461 * 5 4 3 29 29 H 1.09000 * 108.88715 * 0.90108 * 6 3 2 30 30 H 1.09001 * 108.88218 * 242.48554 * 6 3 2 31 31 H 0.97002 * 119.99949 * 179.97438 * 12 11 9 32 32 H 1.08997 * 111.12665 * 159.34824 * 17 7 6 33 33 H 1.08996 * 111.13548 * 283.53337 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5697 1.4670 -0.0224 5 6 4.1101 0.6404 1.1462 6 6 1.4756 2.2088 -1.2070 7 6 0.6766 3.4455 -0.7931 8 1 1.3422 4.3062 -0.7286 9 6 -0.4012 3.7151 -1.8113 10 1 -0.5067 3.0687 -2.6701 11 6 -1.2488 4.7905 -1.6498 12 7 -1.1200 5.5779 -0.6043 13 14 -2.5798 5.1292 -2.9159 14 1 -3.8216 4.4104 -2.5330 15 1 -2.8498 6.5884 -2.9720 16 1 -2.1261 4.6580 -4.2491 17 6 0.0299 3.1871 0.5934 18 16 1.4096 2.3415 1.4689 19 1 -0.3633 0.5201 0.8864 20 1 -0.3634 0.5076 -0.8935 21 1 -0.3633 -1.0276 0.0072 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 3.9260 1.0444 -0.9618 25 1 3.9179 2.4958 0.0685 26 1 3.6714 0.9979 2.0777 27 1 3.8499 -0.4080 1.0007 28 1 5.1944 0.7425 1.1927 29 1 0.8262 1.5430 -1.7754 30 1 2.3025 2.5203 -1.8451 31 1 -1.7161 6.3348 -0.4908 32 1 -0.2321 4.1238 1.0854 33 1 -0.8389 2.5346 0.5064 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259546923.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = -44.060915 kcal Electronic energy + Delta-G solvation = -13135.101243 eV Core-core repulsion = 11092.193239 eV Total energy + Delta-G solvation = -2042.908003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.01497 -35.90205 -33.31830 -32.45800 -28.83919 -27.41802 -25.36244 -23.72061 -21.96888 -20.54692 -18.53200 -17.02176 -16.22302 -16.07045 -15.68742 -15.28180 -14.80856 -14.66874 -14.15893 -13.48921 -12.97502 -12.91348 -12.81937 -12.72536 -12.71489 -12.48706 -12.21301 -11.89584 -11.75683 -11.57697 -11.31071 -11.14533 -10.91374 -10.61540 -10.29918 -8.48552 -8.15293 -6.29640 1.24298 1.40578 1.42311 1.51977 1.72092 2.40634 3.13847 3.82790 3.87114 4.04360 4.37708 4.47769 4.51465 4.57919 4.64794 4.75423 4.83769 4.86838 5.00318 5.04344 5.08391 5.15854 5.19451 5.31814 5.35393 5.48322 5.51535 5.57889 5.71440 5.85115 6.22375 6.79209 7.39069 8.90329 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046334 B = 0.009458 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.163299 B = 2959.886490 C = 3072.201003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.095 4.095 3 C 0.009 3.991 4 C -0.099 4.099 5 C -0.146 4.146 6 C -0.109 4.109 7 C 0.047 3.953 8 H -0.001 1.001 9 C -0.528 4.528 10 H 0.061 0.939 11 C 0.014 3.986 12 N -0.918 5.918 13 Si 0.957 3.043 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.265 1.265 17 C -0.012 4.012 18 S -0.369 6.369 19 H 0.046 0.954 20 H 0.045 0.955 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.263 0.737 32 H 0.073 0.927 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 -10.225 0.064 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.134 4.134 3 C -0.100 4.100 4 C -0.138 4.138 5 C -0.203 4.203 6 C -0.148 4.148 7 C 0.027 3.973 8 H 0.018 0.982 9 C -0.567 4.567 10 H 0.079 0.921 11 C -0.185 4.185 12 N -0.556 5.556 13 Si 0.782 3.218 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.160 4.160 18 S -0.140 6.140 19 H 0.065 0.935 20 H 0.064 0.936 21 H 0.089 0.911 22 H 0.104 0.896 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.147 -10.031 1.341 11.841 hybrid contribution -1.372 0.915 -1.491 2.223 sum 4.775 -9.115 -0.150 10.291 Atomic orbital electron populations 1.21967 0.96214 1.01689 1.01774 1.21659 0.95888 0.92846 1.03001 1.23406 0.98310 0.96930 0.91368 1.21587 0.90778 1.00920 1.00535 1.21788 1.01035 1.00228 0.97237 1.22197 0.99143 0.96806 0.96630 1.19385 0.93475 0.93021 0.91451 0.98249 1.21472 1.15372 1.11847 1.08045 0.92107 1.25797 0.99723 0.95653 0.97351 1.70058 1.39126 1.16831 1.29618 0.85565 0.79365 0.77146 0.79689 1.20048 1.21124 1.18984 1.24316 0.94628 0.99258 0.97786 1.87133 1.42042 1.61142 1.23682 0.93471 0.93550 0.91149 0.89597 0.90435 0.89320 0.92747 0.93940 0.91168 0.91285 0.91224 0.91936 0.92843 0.90819 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 8.66 71.98 0.62 -4.34 16 2 C -0.09 -2.68 4.52 30.59 0.14 -2.54 16 3 C 0.01 0.31 0.67 -10.56 -0.01 0.30 16 4 C -0.10 -2.82 4.80 30.59 0.15 -2.67 16 5 C -0.15 -3.51 9.18 71.98 0.66 -2.85 16 6 C -0.11 -4.35 4.75 30.81 0.15 -4.21 16 7 C 0.05 2.34 2.45 -10.82 -0.03 2.31 16 8 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 9 C -0.53 -28.21 8.43 25.60 0.22 -27.99 16 10 H 0.06 3.15 7.54 -2.91 -0.02 3.13 16 11 C 0.01 0.79 5.31 84.65 0.45 1.24 16 12 N -0.92 -52.65 11.78 21.45 0.25 -52.39 16 13 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 C -0.01 -0.58 5.62 72.72 0.41 -0.17 16 18 S -0.37 -15.13 19.74 -56.49 -1.12 -16.25 16 19 H 0.05 1.66 5.98 -2.39 -0.01 1.65 16 20 H 0.05 1.61 6.29 -2.39 -0.02 1.59 16 21 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 23 H 0.08 2.01 6.63 -2.39 -0.02 2.00 16 24 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.04 1.19 7.14 -2.39 -0.02 1.17 16 27 H 0.07 1.46 6.80 -2.39 -0.02 1.44 16 28 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 2.72 5.48 -2.39 -0.01 2.71 16 30 H 0.06 2.37 7.62 -2.39 -0.02 2.35 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.07 4.04 7.09 -2.39 -0.02 4.02 16 33 H 0.06 3.00 6.92 -2.39 -0.02 2.98 16 Total: -1.00 -58.15 261.44 4.99 -53.16 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.07 Total: 11.65 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 2.76 Total: -40.91 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.25 Total: -52.39 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -15.13 SS G_CDS: -1.12 Total: -16.25 kcal Total: -58.15 4.99 -53.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546923.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.101 kcal (2) G-P(sol) polarization free energy of solvation -58.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds