Wall clock time and date at job start Mon Mar 30 2020 02:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47003 * 2 1 4 4 C 1.52998 * 110.39059 * 175.95445 * 3 2 1 5 5 C 1.53007 * 109.46783 * 58.11970 * 4 3 2 6 6 C 1.53708 * 110.34360 * 53.72775 * 3 2 1 7 7 C 1.52947 * 112.48990 * 238.30357 * 6 3 2 8 8 H 1.08995 * 109.60049 * 270.16896 * 7 6 3 9 9 C 1.50702 * 109.60257 * 150.03113 * 7 6 3 10 10 H 1.08003 * 119.99643 * 359.97438 * 9 7 6 11 11 C 1.37878 * 120.00110 * 179.97438 * 9 7 6 12 12 N 1.31517 * 119.99919 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 120.00134 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46934 * 89.99994 * 13 11 9 15 15 H 1.48496 * 109.47069 * 210.00281 * 13 11 9 16 16 H 1.48507 * 109.47153 * 329.99943 * 13 11 9 17 17 C 1.55152 * 108.95877 * 30.10066 * 7 6 3 18 18 S 1.83397 * 110.33899 * 298.18346 * 3 2 1 19 19 H 1.09007 * 109.46733 * 60.75587 * 1 2 3 20 20 H 1.09001 * 109.46930 * 180.75558 * 1 2 3 21 21 H 1.08999 * 109.47539 * 300.75511 * 1 2 3 22 22 H 1.08999 * 109.47257 * 239.99776 * 2 1 3 23 23 H 1.09003 * 109.46871 * 119.99495 * 2 1 3 24 24 H 1.08994 * 109.47234 * 178.11481 * 4 3 2 25 25 H 1.08997 * 109.47183 * 298.12694 * 4 3 2 26 26 H 1.08997 * 109.47116 * 173.29606 * 5 4 3 27 27 H 1.09000 * 109.46910 * 293.29119 * 5 4 3 28 28 H 1.08992 * 109.47478 * 53.29142 * 5 4 3 29 29 H 1.08994 * 108.88654 * 359.09564 * 6 3 2 30 30 H 1.09000 * 108.88740 * 117.65159 * 6 3 2 31 31 H 0.96991 * 120.00057 * 180.02562 * 12 11 9 32 32 H 1.09002 * 111.12418 * 200.64944 * 17 7 6 33 33 H 1.09000 * 111.13323 * 76.47816 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5664 1.4683 0.1012 5 6 4.1683 0.6865 -1.0683 6 6 1.4142 2.2305 1.1619 7 6 0.6381 3.4590 0.6847 8 1 1.3058 4.3195 0.6421 9 6 -0.4908 3.7466 1.6407 10 1 -0.6412 3.1155 2.5041 11 6 -1.3315 4.8154 1.4131 12 7 -1.1486 5.5837 0.3614 13 14 -2.7313 5.1715 2.5977 14 1 -2.2565 6.0910 3.6628 15 1 -3.8541 5.8052 1.8610 16 1 -3.1959 3.9014 3.2111 17 6 0.0640 3.1750 -0.7284 18 16 1.4867 2.3142 -1.5157 19 1 -0.3633 0.5021 -0.8968 20 1 -0.3633 -1.0276 0.0136 21 1 -0.3634 0.5255 0.8831 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.9155 2.5002 0.0662 25 1 3.8760 1.0114 1.0411 26 1 5.2519 0.8037 -1.0644 27 1 3.9167 -0.3693 -0.9673 28 1 3.7649 1.0679 -2.0063 29 1 0.7360 1.5749 1.7080 30 1 2.2073 2.5562 1.8350 31 1 -1.7398 6.3358 0.2015 32 1 -0.1719 4.1024 -1.2503 33 1 -0.8084 2.5238 -0.6746 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259546925.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:10 Heat of formation + Delta-G solvation = -30.642051 kcal Electronic energy + Delta-G solvation = -13137.477415 eV Core-core repulsion = 11095.151297 eV Total energy + Delta-G solvation = -2042.326118 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.50845 -34.09532 -31.70463 -30.92890 -27.25423 -25.41564 -23.84726 -22.40924 -20.32516 -18.94036 -16.52727 -15.31566 -14.57635 -14.43425 -14.15086 -13.93341 -13.39273 -12.98844 -12.42195 -11.86052 -11.69178 -11.33234 -11.22903 -11.11487 -11.01803 -10.86629 -10.61865 -10.35609 -10.24090 -10.02780 -9.73815 -9.37652 -9.23884 -8.65084 -8.41256 -6.80432 -6.11307 -4.17401 2.83273 3.24192 3.32200 3.34702 3.50217 4.35459 5.16049 5.18604 5.23784 5.43676 5.57258 5.72931 5.80675 6.02815 6.09404 6.17450 6.22143 6.34996 6.37500 6.43588 6.52922 6.58843 6.68808 6.76189 6.83559 6.88350 7.04840 7.46733 7.70073 7.87751 8.24804 8.84861 9.47718 10.96038 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046189 B = 0.009499 C = 0.009117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.064771 B = 2947.122941 C = 3070.587654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 C 0.001 3.999 4 C -0.099 4.099 5 C -0.151 4.151 6 C -0.116 4.116 7 C 0.048 3.952 8 H 0.038 0.962 9 C -0.514 4.514 10 H 0.059 0.941 11 C 0.064 3.936 12 N -0.887 5.887 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.017 4.017 18 S -0.368 6.368 19 H 0.066 0.934 20 H 0.043 0.957 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.106 0.894 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 -8.195 -0.475 9.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.137 4.137 3 C -0.109 4.109 4 C -0.137 4.137 5 C -0.208 4.208 6 C -0.154 4.154 7 C 0.028 3.972 8 H 0.056 0.944 9 C -0.553 4.553 10 H 0.077 0.923 11 C -0.139 4.139 12 N -0.525 5.525 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.165 4.165 18 S -0.140 6.140 19 H 0.085 0.915 20 H 0.062 0.938 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.475 -8.019 -1.746 9.866 hybrid contribution -1.272 0.336 1.698 2.148 sum 4.203 -7.684 -0.048 8.758 Atomic orbital electron populations 1.22013 0.95401 1.00578 1.03808 1.21624 0.96645 0.94445 1.01015 1.23199 0.96833 0.96470 0.94360 1.21549 0.92791 1.01173 0.98227 1.21826 0.99712 0.99935 0.99374 1.22347 0.99047 0.98094 0.95938 1.19457 0.94461 0.92497 0.90787 0.94402 1.21138 1.12699 1.12500 1.08998 0.92324 1.25008 0.97714 0.95791 0.95393 1.69912 1.38367 1.17230 1.27004 0.86560 0.81795 0.78535 0.80966 1.20608 1.21153 1.19838 1.24733 0.92851 1.00227 0.98662 1.87190 1.42952 1.61692 1.22141 0.91497 0.93798 0.91482 0.91943 0.92305 0.91200 0.91901 0.93291 0.93007 0.91891 0.91444 0.92657 0.92730 0.87545 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 8.75 37.16 0.32 -2.34 16 2 C -0.10 -1.55 4.54 -26.73 -0.12 -1.67 16 3 C 0.00 0.02 0.66 -90.25 -0.06 -0.04 16 4 C -0.10 -1.54 4.80 -26.73 -0.13 -1.66 16 5 C -0.15 -2.10 9.25 37.16 0.34 -1.75 16 6 C -0.12 -2.35 4.74 -26.39 -0.13 -2.47 16 7 C 0.05 1.17 2.45 -90.66 -0.22 0.95 16 8 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 9 C -0.51 -13.50 8.44 -34.44 -0.29 -13.79 16 10 H 0.06 1.52 7.54 -52.48 -0.40 1.12 16 11 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 12 N -0.89 -24.66 11.78 55.43 0.65 -24.01 16 13 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 C -0.02 -0.41 5.62 38.30 0.22 -0.19 16 18 S -0.37 -7.56 19.72 -107.50 -2.12 -9.68 16 19 H 0.07 1.21 6.03 -51.93 -0.31 0.90 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.07 1.21 6.08 -51.93 -0.32 0.89 16 22 H 0.06 0.95 6.87 -51.93 -0.36 0.59 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 28 H 0.06 0.97 6.95 -51.93 -0.36 0.61 16 29 H 0.07 1.36 5.26 -51.93 -0.27 1.09 16 30 H 0.05 1.08 7.62 -51.93 -0.40 0.68 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.11 2.76 7.08 -51.93 -0.37 2.39 16 33 H 0.07 1.63 6.89 -51.93 -0.36 1.27 16 LS Contribution 261.35 15.07 3.94 3.94 Total: -1.00 -26.61 261.35 -7.88 -34.49 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.17 Total: 0.97 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -0.16 Total: -21.37 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.65 Total: -24.01 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -2.12 Total: -9.68 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.61 -7.88 -34.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546925.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.849 kcal (2) G-P(sol) polarization free energy of solvation -26.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds