Wall clock time and date at job start Mon Mar 30 2020 02:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47003 * 2 1 4 4 C 1.52998 * 110.39059 * 175.95445 * 3 2 1 5 5 C 1.53007 * 109.46783 * 58.11970 * 4 3 2 6 6 C 1.53708 * 110.34360 * 53.72775 * 3 2 1 7 7 C 1.52947 * 112.48990 * 238.30357 * 6 3 2 8 8 H 1.08995 * 109.60049 * 270.16896 * 7 6 3 9 9 C 1.50702 * 109.60257 * 150.03113 * 7 6 3 10 10 H 1.08003 * 119.99643 * 359.97438 * 9 7 6 11 11 C 1.37878 * 120.00110 * 179.97438 * 9 7 6 12 12 N 1.31517 * 119.99919 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 120.00134 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46934 * 89.99994 * 13 11 9 15 15 H 1.48496 * 109.47069 * 210.00281 * 13 11 9 16 16 H 1.48507 * 109.47153 * 329.99943 * 13 11 9 17 17 C 1.55152 * 108.95877 * 30.10066 * 7 6 3 18 18 S 1.83397 * 110.33899 * 298.18346 * 3 2 1 19 19 H 1.09007 * 109.46733 * 60.75587 * 1 2 3 20 20 H 1.09001 * 109.46930 * 180.75558 * 1 2 3 21 21 H 1.08999 * 109.47539 * 300.75511 * 1 2 3 22 22 H 1.08999 * 109.47257 * 239.99776 * 2 1 3 23 23 H 1.09003 * 109.46871 * 119.99495 * 2 1 3 24 24 H 1.08994 * 109.47234 * 178.11481 * 4 3 2 25 25 H 1.08997 * 109.47183 * 298.12694 * 4 3 2 26 26 H 1.08997 * 109.47116 * 173.29606 * 5 4 3 27 27 H 1.09000 * 109.46910 * 293.29119 * 5 4 3 28 28 H 1.08992 * 109.47478 * 53.29142 * 5 4 3 29 29 H 1.08994 * 108.88654 * 359.09564 * 6 3 2 30 30 H 1.09000 * 108.88740 * 117.65159 * 6 3 2 31 31 H 0.96991 * 120.00057 * 180.02562 * 12 11 9 32 32 H 1.09002 * 111.12418 * 200.64944 * 17 7 6 33 33 H 1.09000 * 111.13323 * 76.47816 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5664 1.4683 0.1012 5 6 4.1683 0.6865 -1.0683 6 6 1.4142 2.2305 1.1619 7 6 0.6381 3.4590 0.6847 8 1 1.3058 4.3195 0.6421 9 6 -0.4908 3.7466 1.6407 10 1 -0.6412 3.1155 2.5041 11 6 -1.3315 4.8154 1.4131 12 7 -1.1486 5.5837 0.3614 13 14 -2.7313 5.1715 2.5977 14 1 -2.2565 6.0910 3.6628 15 1 -3.8541 5.8052 1.8610 16 1 -3.1959 3.9014 3.2111 17 6 0.0640 3.1750 -0.7284 18 16 1.4867 2.3142 -1.5157 19 1 -0.3633 0.5021 -0.8968 20 1 -0.3633 -1.0276 0.0136 21 1 -0.3634 0.5255 0.8831 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.9155 2.5002 0.0662 25 1 3.8760 1.0114 1.0411 26 1 5.2519 0.8037 -1.0644 27 1 3.9167 -0.3693 -0.9673 28 1 3.7649 1.0679 -2.0063 29 1 0.7360 1.5749 1.7080 30 1 2.2073 2.5562 1.8350 31 1 -1.7398 6.3358 0.2015 32 1 -0.1719 4.1024 -1.2503 33 1 -0.8084 2.5238 -0.6746 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259546925.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:10 Heat of formation + Delta-G solvation = -43.646889 kcal Electronic energy + Delta-G solvation = -13138.041347 eV Core-core repulsion = 11095.151297 eV Total energy + Delta-G solvation = -2042.890050 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.01923 -35.89342 -33.32345 -32.46734 -28.80115 -27.41945 -25.41762 -23.67544 -21.99032 -20.53011 -18.53282 -17.02989 -16.23055 -16.06742 -15.67419 -15.27332 -14.85587 -14.65997 -14.15126 -13.47506 -12.96676 -12.92179 -12.82307 -12.72271 -12.68781 -12.49671 -12.22626 -11.88350 -11.74706 -11.58934 -11.30819 -11.16381 -10.90045 -10.59822 -10.29771 -8.49220 -8.15121 -6.29445 1.24566 1.40570 1.42403 1.52031 1.72324 2.40730 3.14035 3.83027 3.86992 4.04372 4.38182 4.47179 4.51632 4.57353 4.65029 4.75756 4.83510 4.86980 5.00612 5.04268 5.08289 5.15635 5.19401 5.32449 5.35380 5.48294 5.51237 5.58605 5.71786 5.85589 6.22543 6.79433 7.39250 8.90524 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046189 B = 0.009499 C = 0.009117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.064771 B = 2947.122941 C = 3070.587654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.094 4.094 3 C 0.009 3.991 4 C -0.099 4.099 5 C -0.146 4.146 6 C -0.111 4.111 7 C 0.047 3.953 8 H -0.001 1.001 9 C -0.528 4.528 10 H 0.061 0.939 11 C 0.014 3.986 12 N -0.918 5.918 13 Si 0.957 3.043 14 H -0.276 1.276 15 H -0.285 1.285 16 H -0.265 1.265 17 C -0.012 4.012 18 S -0.368 6.368 19 H 0.044 0.956 20 H 0.070 0.930 21 H 0.048 0.952 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.073 0.927 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.840 -10.223 0.452 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.133 4.133 3 C -0.100 4.100 4 C -0.138 4.138 5 C -0.203 4.203 6 C -0.149 4.149 7 C 0.027 3.973 8 H 0.017 0.983 9 C -0.567 4.567 10 H 0.079 0.921 11 C -0.185 4.185 12 N -0.557 5.557 13 Si 0.782 3.218 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.189 1.189 17 C -0.160 4.160 18 S -0.140 6.140 19 H 0.063 0.937 20 H 0.089 0.911 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.105 0.895 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.202 -10.060 -0.815 11.846 hybrid contribution -1.439 0.956 1.401 2.224 sum 4.763 -9.104 0.586 10.291 Atomic orbital electron populations 1.21968 0.96199 1.01690 1.01756 1.21647 0.95877 0.92834 1.02970 1.23404 0.98508 0.97049 0.91058 1.21585 0.90703 1.01040 1.00452 1.21780 1.00808 1.00420 0.97295 1.22221 0.98986 0.96726 0.96975 1.19384 0.93785 0.93017 0.91146 0.98280 1.21475 1.13261 1.12596 1.09383 0.92095 1.25796 1.00118 0.95735 0.96882 1.70055 1.39339 1.17678 1.28585 0.85567 0.78764 0.78564 0.78882 1.20178 1.21101 1.18887 1.24306 0.94037 0.99094 0.98600 1.87134 1.41196 1.61774 1.23862 0.93678 0.91127 0.93348 0.90588 0.89511 0.92764 0.89241 0.91281 0.91262 0.93918 0.91031 0.91959 0.92851 0.90833 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 8.75 71.98 0.63 -4.32 16 2 C -0.09 -2.66 4.54 30.59 0.14 -2.52 16 3 C 0.01 0.31 0.66 -10.56 -0.01 0.30 16 4 C -0.10 -2.80 4.80 30.60 0.15 -2.66 16 5 C -0.15 -3.55 9.25 71.98 0.67 -2.88 16 6 C -0.11 -4.40 4.74 30.81 0.15 -4.26 16 7 C 0.05 2.34 2.45 -10.82 -0.03 2.31 16 8 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 9 C -0.53 -28.18 8.44 25.60 0.22 -27.96 16 10 H 0.06 3.15 7.54 -2.91 -0.02 3.13 16 11 C 0.01 0.78 5.31 84.65 0.45 1.23 16 12 N -0.92 -52.68 11.78 21.45 0.25 -52.43 16 13 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 17 C -0.01 -0.60 5.62 72.72 0.41 -0.19 16 18 S -0.37 -15.12 19.72 -56.49 -1.11 -16.23 16 19 H 0.04 1.59 6.03 -2.38 -0.01 1.57 16 20 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.05 1.67 6.08 -2.39 -0.01 1.66 16 22 H 0.08 1.99 6.87 -2.39 -0.02 1.98 16 23 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.45 6.95 -2.39 -0.02 1.44 16 28 H 0.04 1.21 6.95 -2.39 -0.02 1.19 16 29 H 0.07 2.79 5.26 -2.39 -0.01 2.78 16 30 H 0.06 2.36 7.62 -2.39 -0.02 2.34 16 31 H 0.26 14.38 8.31 -92.72 -0.77 13.61 16 32 H 0.07 4.03 7.08 -2.39 -0.02 4.02 16 33 H 0.06 2.99 6.89 -2.39 -0.02 2.98 16 Total: -1.00 -58.18 261.35 5.00 -53.18 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 1.07 Total: 11.68 kcal Atomic # 6 Polarization: -43.71 SS G_CDS: 2.77 Total: -40.94 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.25 Total: -52.43 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: -15.12 SS G_CDS: -1.11 Total: -16.23 kcal Total: -58.18 5.00 -53.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546925.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.530 kcal (2) G-P(sol) polarization free energy of solvation -58.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds