Wall clock time and date at job start Mon Mar 30 2020 02:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 111.00080 * 2 1 4 4 C 1.53239 * 109.34012 * 172.74972 * 3 2 1 5 5 N 1.47079 * 108.51906 * 53.83108 * 4 3 2 6 6 C 1.36939 * 120.87775 * 128.81832 * 5 4 3 7 7 H 1.07994 * 120.00357 * 333.73219 * 6 5 4 8 8 C 1.38813 * 119.99704 * 153.46336 * 6 5 4 9 9 N 1.31620 * 119.99873 * 159.66488 * 8 6 5 10 10 Si 1.86796 * 120.00148 * 339.66156 * 8 6 5 11 11 H 1.48501 * 109.46989 * 91.87257 * 10 8 6 12 12 H 1.48501 * 109.47451 * 211.87383 * 10 8 6 13 13 H 1.48506 * 109.47144 * 331.87515 * 10 8 6 14 14 C 1.47080 * 118.24226 * 309.08585 * 5 4 3 15 15 C 1.46903 * 110.99572 * 235.70173 * 2 1 3 16 16 H 1.09005 * 109.49344 * 67.29239 * 15 2 1 17 17 C 1.50694 * 109.49468 * 307.21160 * 15 2 1 18 18 O 1.20829 * 120.00243 * 340.00247 * 17 15 2 19 19 O 1.34229 * 120.00243 * 160.00122 * 17 15 2 20 20 H 1.08999 * 109.47610 * 63.95071 * 1 2 3 21 21 H 1.09004 * 109.46670 * 183.95288 * 1 2 3 22 22 H 1.08997 * 109.46759 * 303.94709 * 1 2 3 23 23 H 1.09000 * 109.48664 * 52.79141 * 3 2 1 24 24 H 1.08999 * 109.51592 * 292.72657 * 3 2 1 25 25 H 1.08994 * 109.62695 * 294.12264 * 4 3 2 26 26 H 1.08994 * 109.78365 * 173.63700 * 4 3 2 27 27 H 0.97003 * 119.99663 * 179.97438 * 9 8 6 28 28 H 1.08999 * 109.63085 * 170.62306 * 14 5 4 29 29 H 1.08994 * 109.62913 * 291.21004 * 14 5 4 30 30 H 0.96702 * 117.00715 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5165 1.3312 0.1825 5 7 4.0869 0.4460 -0.8443 6 6 5.1218 0.8650 -1.6372 7 1 5.2590 1.9179 -1.8346 8 6 5.9980 -0.0633 -2.1826 9 7 6.7246 0.2555 -3.2328 10 14 6.1460 -1.7648 -1.4262 11 1 5.2005 -2.6903 -2.1007 12 1 7.5341 -2.2638 -1.5976 13 1 5.8208 -1.6932 0.0210 14 6 3.5124 -0.8988 -1.0011 15 6 1.9954 -0.7728 -1.1330 16 1 1.7554 -0.2612 -2.0651 17 6 1.3735 -2.1455 -1.1377 18 8 0.8729 -2.5854 -0.1298 19 8 1.3757 -2.8795 -2.2614 20 1 -0.3634 0.4513 -0.9232 21 1 -0.3633 -1.0253 0.0708 22 1 -0.3633 0.5739 0.8525 23 1 1.5457 1.9336 0.8184 24 1 1.7555 1.8536 -0.9476 25 1 3.7562 0.9449 1.1731 26 1 3.9281 2.3342 0.0711 27 1 7.3371 -0.3931 -3.6137 28 1 3.9188 -1.3685 -1.8969 29 1 3.7517 -1.5035 -0.1265 30 1 0.9654 -3.7540 -2.2156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259638004.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:45 Heat of formation + Delta-G solvation = -69.579667 kcal Electronic energy + Delta-G solvation = -15267.767569 eV Core-core repulsion = 12677.459775 eV Total energy + Delta-G solvation = -2590.307794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.74876 -39.51845 -37.27589 -36.19811 -33.66660 -32.63693 -29.73302 -26.29983 -26.04159 -24.53442 -22.55045 -21.01687 -19.27508 -18.95758 -17.91939 -17.30062 -16.77000 -16.19647 -15.86638 -15.78317 -15.25424 -14.94406 -14.44169 -14.05337 -13.88933 -13.34494 -13.19379 -12.86956 -12.65072 -12.37843 -12.30499 -12.02187 -11.89791 -11.57423 -11.34699 -10.79406 -9.50876 -9.01719 -8.20973 -5.54422 0.99249 1.25985 1.38834 1.46780 1.84275 2.36627 2.75068 3.06540 3.32444 3.84539 3.93955 4.08808 4.20286 4.38429 4.45921 4.51327 4.60193 4.68973 4.70916 4.92137 4.97299 5.22618 5.48673 5.76495 5.85090 5.99664 6.11073 6.79952 6.93090 7.52239 7.94810 8.98176 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031129 B = 0.013587 C = 0.010602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.260998 B = 2060.361344 C = 2640.494329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.535 5.535 3 C 0.052 3.948 4 C 0.140 3.860 5 N -0.616 5.616 6 C -0.251 4.251 7 H 0.066 0.934 8 C -0.025 4.025 9 N -0.948 5.948 10 Si 0.929 3.071 11 H -0.272 1.272 12 H -0.304 1.304 13 H -0.267 1.267 14 C 0.143 3.857 15 C 0.081 3.919 16 H 0.076 0.924 17 C 0.492 3.508 18 O -0.517 6.517 19 O -0.510 6.510 20 H 0.030 0.970 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.114 0.886 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.264 0.736 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.063 -2.741 4.770 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.262 5.262 3 C -0.076 4.076 4 C 0.016 3.984 5 N -0.340 5.340 6 C -0.380 4.380 7 H 0.084 0.916 8 C -0.220 4.220 9 N -0.593 5.593 10 Si 0.758 3.242 11 H -0.199 1.199 12 H -0.232 1.232 13 H -0.192 1.192 14 C 0.017 3.983 15 C -0.030 4.030 16 H 0.094 0.906 17 C 0.334 3.666 18 O -0.406 6.406 19 O -0.324 6.324 20 H 0.049 0.951 21 H 0.090 0.910 22 H 0.112 0.888 23 H 0.132 0.868 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -12.738 -2.730 5.350 14.082 hybrid contribution 0.040 -1.032 -0.695 1.245 sum -12.698 -3.762 4.655 14.038 Atomic orbital electron populations 1.22658 0.85551 1.03393 1.01691 1.61708 1.09289 1.14538 1.40650 1.22642 0.95971 0.87218 1.01728 1.21335 0.91716 0.94604 0.90758 1.44494 1.37246 1.12684 1.39613 1.18898 1.03379 0.93693 1.22072 0.91637 1.25795 0.97166 1.01267 0.97822 1.69930 1.29761 1.37203 1.22431 0.86183 0.75943 0.82051 0.80011 1.19882 1.23248 1.19206 1.21177 0.89197 0.88520 0.99430 1.21637 0.96670 0.89244 0.95479 0.90623 1.23100 0.75485 0.87568 0.80493 1.90637 1.43346 1.72044 1.34585 1.84545 1.75306 1.34668 1.37883 0.95111 0.91019 0.88849 0.86845 0.94594 0.94320 0.90514 0.92690 0.91585 0.95034 0.70737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.37 9.08 127.69 1.16 1.53 16 2 N -0.53 -17.48 4.51 -901.38 -4.06 -21.55 16 3 C 0.05 1.59 5.62 86.38 0.49 2.08 16 4 C 0.14 5.26 6.70 86.35 0.58 5.83 16 5 N -0.62 -28.90 2.82 -699.03 -1.97 -30.87 16 6 C -0.25 -13.94 10.08 84.03 0.85 -13.10 16 7 H 0.07 3.89 8.05 -2.91 -0.02 3.86 16 8 C -0.02 -1.42 5.24 84.86 0.44 -0.98 16 9 N -0.95 -58.39 13.97 21.65 0.30 -58.08 16 10 Si 0.93 46.27 24.31 68.60 1.67 47.93 16 11 H -0.27 -12.82 6.59 99.48 0.66 -12.16 16 12 H -0.30 -15.24 7.11 99.48 0.71 -14.54 16 13 H -0.27 -13.12 6.61 99.48 0.66 -12.46 16 14 C 0.14 6.30 3.59 86.20 0.31 6.61 16 15 C 0.08 2.96 2.50 44.10 0.11 3.07 16 16 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 17 C 0.49 16.19 6.77 71.23 0.48 16.67 16 18 O -0.52 -18.23 15.18 21.95 0.33 -17.90 16 19 O -0.51 -13.71 13.42 -51.40 -0.69 -14.40 16 20 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 21 H 0.07 2.02 5.52 -2.39 -0.01 2.01 16 22 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 23 H 0.11 2.64 8.07 -2.39 -0.02 2.62 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 2.75 7.95 -2.39 -0.02 2.73 16 27 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.07 3.14 4.63 -2.39 -0.01 3.13 16 29 H 0.03 1.44 6.93 -2.39 -0.02 1.43 16 30 H 0.43 6.66 9.10 -74.06 -0.67 5.98 16 Total: -1.00 -68.27 243.29 0.37 -67.90 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.38 Total: 5.24 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 4.42 Total: 21.72 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -5.73 Total: -110.50 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.36 Total: -32.30 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.67 Total: 47.93 kcal Total: -68.27 0.37 -67.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259638004.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.678 kcal (2) G-P(sol) polarization free energy of solvation -68.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds