Wall clock time and date at job start Mon Mar 30 2020 02:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34641 * 116.99693 * 2 1 4 4 O 1.21509 * 120.00626 * 0.02562 * 3 2 1 5 5 N 1.34786 * 119.99653 * 179.97438 * 3 2 1 6 6 C 1.47418 * 125.65024 * 359.97438 * 5 3 2 7 7 C 1.54907 * 104.83493 * 155.90073 * 6 5 3 8 8 H 1.09002 * 111.00447 * 278.93466 * 7 6 5 9 9 N 1.46900 * 111.00537 * 155.11827 * 7 6 5 10 10 C 1.55157 * 101.58128 * 37.00806 * 7 6 5 11 11 H 1.09000 * 110.71794 * 82.86148 * 10 7 6 12 12 C 1.50693 * 110.72234 * 206.13337 * 10 7 6 13 13 H 1.08000 * 120.00024 * 359.97438 * 12 10 7 14 14 C 1.37874 * 120.00191 * 179.97438 * 12 10 7 15 15 N 1.31522 * 120.00267 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00270 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46958 * 60.00137 * 16 14 12 18 18 H 1.48504 * 109.47298 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47410 * 300.00204 * 16 14 12 20 20 C 1.47019 * 125.64350 * 180.02562 * 5 3 2 21 21 H 1.08997 * 109.47170 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47192 * 300.00544 * 1 2 3 23 23 H 1.09002 * 109.46709 * 59.99663 * 1 2 3 24 24 H 1.09003 * 110.36673 * 37.06281 * 6 5 3 25 25 H 1.08997 * 110.36612 * 274.74555 * 6 5 3 26 26 H 1.00899 * 110.99574 * 64.58305 * 9 7 6 27 27 H 1.00898 * 111.00112 * 188.53510 * 9 7 6 28 28 H 0.96994 * 120.00450 * 179.97438 * 15 14 12 29 29 H 1.08993 * 109.88762 * 300.44792 * 20 5 3 30 30 H 1.09003 * 109.88200 * 61.46099 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2188 0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.3299 0.1189 0.0017 7 6 5.6454 0.6625 -0.6096 8 1 5.5905 0.6850 -1.6980 9 7 6.8003 -0.1260 -0.1596 10 6 5.6901 2.0991 -0.0252 11 1 6.1059 2.0927 0.9824 12 6 6.4797 3.0159 -0.9235 13 1 6.9195 2.6337 -1.8328 14 6 6.6405 4.3426 -0.5846 15 7 6.1054 4.8080 0.5229 16 14 7.6186 5.4792 -1.6986 17 1 6.9823 5.5261 -3.0395 18 1 7.6437 6.8441 -1.1140 19 1 9.0079 4.9709 -1.8276 20 6 4.2023 2.5082 0.0011 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 3.9303 -0.6870 -0.6139 25 1 4.5004 -0.2295 1.0203 26 1 6.7438 -1.0751 -0.4973 27 1 7.6664 0.3075 -0.4426 28 1 6.2189 5.7413 0.7616 29 1 3.9652 3.1008 -0.8824 30 1 3.9895 3.0843 0.9017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259739490.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:19 Heat of formation + Delta-G solvation = -101.472274 kcal Electronic energy + Delta-G solvation = -14712.506107 eV Core-core repulsion = 12120.815346 eV Total energy + Delta-G solvation = -2591.690761 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.55182 -39.43310 -37.29922 -35.06898 -34.41597 -31.25950 -28.82813 -28.32281 -26.72738 -23.88369 -21.52893 -21.22597 -19.10629 -18.59769 -17.96565 -17.67307 -16.63172 -16.32426 -16.01987 -15.33344 -14.87478 -14.35345 -14.26918 -14.17512 -13.63315 -13.37242 -12.91471 -12.79529 -12.67428 -12.37375 -12.15487 -11.80464 -11.76205 -11.18348 -11.06387 -10.61259 -9.75249 -9.48196 -8.18684 -6.30421 1.13546 1.44797 1.45930 1.53167 1.68268 2.41940 3.01994 3.13700 3.70620 3.95506 4.18560 4.36272 4.38228 4.44581 4.55466 4.63556 4.70723 4.98358 5.03183 5.07906 5.19488 5.40504 5.58498 5.80166 6.18105 6.41913 6.48421 6.78941 6.85186 7.18257 7.39510 8.90909 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.036522 B = 0.009014 C = 0.007650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.483198 B = 3105.590598 C = 3659.403728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.369 6.369 3 C 0.653 3.347 4 O -0.616 6.616 5 N -0.602 5.602 6 C 0.117 3.883 7 C 0.089 3.911 8 H 0.044 0.956 9 N -0.832 5.832 10 C 0.054 3.946 11 H 0.027 0.973 12 C -0.529 4.529 13 H 0.066 0.934 14 C 0.015 3.985 15 N -0.919 5.919 16 Si 0.959 3.041 17 H -0.274 1.274 18 H -0.289 1.289 19 H -0.263 1.263 20 C 0.157 3.843 21 H 0.145 0.855 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.349 0.651 27 H 0.352 0.648 28 H 0.263 0.737 29 H 0.035 0.965 30 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 -11.570 -2.663 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.282 6.282 3 C 0.408 3.592 4 O -0.509 6.509 5 N -0.342 5.342 6 C -0.005 4.005 7 C -0.024 4.024 8 H 0.062 0.938 9 N -0.364 5.364 10 C 0.035 3.965 11 H 0.045 0.955 12 C -0.567 4.567 13 H 0.084 0.916 14 C -0.185 4.185 15 N -0.557 5.557 16 Si 0.784 3.216 17 H -0.199 1.199 18 H -0.215 1.215 19 H -0.188 1.188 20 C 0.035 3.965 21 H 0.162 0.838 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.113 0.887 25 H 0.096 0.904 26 H 0.163 0.837 27 H 0.166 0.834 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.717 -11.005 -1.816 12.110 hybrid contribution 0.322 1.172 -1.253 1.745 sum -4.394 -9.834 -3.069 11.199 Atomic orbital electron populations 1.23534 0.72815 1.05818 1.02409 1.86252 1.25793 1.29201 1.86977 1.17816 0.82349 0.82431 0.76574 1.90929 1.64841 1.36549 1.58555 1.47552 1.01589 1.11131 1.73967 1.22366 0.88560 0.87419 1.02183 1.22391 0.90068 0.93869 0.96034 0.93770 1.58452 1.04172 1.05911 1.67879 1.19650 0.88787 0.91371 0.96741 0.95460 1.21283 1.33184 0.94488 1.07771 0.91595 1.25840 0.96372 1.00012 0.96288 1.70071 1.45275 1.15581 1.24734 0.85594 0.79547 0.77628 0.78811 1.19885 1.21480 1.18784 1.22131 0.92240 0.83333 0.98764 0.83761 0.92361 0.92282 0.88740 0.90371 0.83731 0.83399 0.92761 0.94690 0.95046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.10 10.56 113.37 1.20 2.30 16 2 O -0.37 -12.02 10.10 -55.50 -0.56 -12.58 16 3 C 0.65 27.48 8.62 129.79 1.12 28.60 16 4 O -0.62 -30.02 16.46 19.81 0.33 -29.69 16 5 N -0.60 -25.71 3.33 -942.09 -3.13 -28.84 16 6 C 0.12 4.04 6.62 86.86 0.57 4.62 16 7 C 0.09 3.29 3.60 46.31 0.17 3.45 16 8 H 0.04 1.65 8.02 -2.39 -0.02 1.64 16 9 N -0.83 -25.49 9.37 -162.93 -1.53 -27.01 16 10 C 0.05 2.61 2.47 -10.35 -0.03 2.58 16 11 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 12 C -0.53 -27.42 8.36 25.60 0.21 -27.21 16 13 H 0.07 3.25 7.76 -2.91 -0.02 3.23 16 14 C 0.02 0.81 5.36 84.65 0.45 1.27 16 15 N -0.92 -53.02 12.77 21.45 0.27 -52.75 16 16 Si 0.96 42.39 29.54 68.60 2.03 44.42 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 20 C 0.16 7.92 5.77 86.73 0.50 8.42 16 21 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.09 2.70 8.04 -2.39 -0.02 2.68 16 25 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.35 8.07 9.08 -89.69 -0.81 7.25 16 27 H 0.35 10.93 9.06 -89.70 -0.81 10.12 16 28 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.03 1.92 7.81 -2.39 -0.02 1.90 16 30 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -66.05 261.16 1.13 -64.92 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.47 Total: 17.50 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 4.20 Total: 24.04 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -4.39 Total: -108.60 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -0.23 Total: -42.28 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -66.05 1.13 -64.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739490.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.552 kcal (2) G-P(sol) polarization free energy of solvation -66.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds