Wall clock time and date at job start Mon Mar 30 2020 02:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34639 * 116.99906 * 2 1 4 4 O 1.21507 * 120.00313 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00045 * 179.97438 * 3 2 1 6 6 C 1.47017 * 125.64778 * 0.02608 * 5 3 2 7 7 C 1.54323 * 107.27070 * 181.02072 * 6 5 3 8 8 H 1.09008 * 110.72020 * 140.55876 * 7 6 5 9 9 N 1.46903 * 110.72116 * 263.65123 * 7 6 5 10 10 C 1.55157 * 102.94217 * 22.19341 * 7 6 5 11 11 H 1.09000 * 111.00495 * 82.61060 * 10 7 6 12 12 C 1.50709 * 111.00160 * 206.42317 * 10 7 6 13 13 H 1.07994 * 119.99861 * 359.97438 * 12 10 7 14 14 C 1.37878 * 119.99517 * 179.97438 * 12 10 7 15 15 N 1.31514 * 120.00060 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99520 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47120 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47009 * 120.00231 * 16 14 12 19 19 H 1.48502 * 109.46980 * 239.99784 * 16 14 12 20 20 C 1.47421 * 125.64878 * 179.71421 * 5 3 2 21 21 H 1.09002 * 109.47379 * 300.00117 * 1 2 3 22 22 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47085 * 60.00320 * 1 2 3 24 24 H 1.08996 * 109.88548 * 300.43788 * 6 5 3 25 25 H 1.08998 * 109.88325 * 61.60291 * 6 5 3 26 26 H 1.00903 * 110.99850 * 298.54254 * 9 7 6 27 27 H 1.00897 * 110.99929 * 62.50147 * 9 7 6 28 28 H 0.96998 * 119.99290 * 179.97438 * 15 14 12 29 29 H 1.09008 * 110.36796 * 274.75033 * 20 5 3 30 30 H 1.09004 * 110.37008 * 37.07019 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.3273 0.1220 0.0006 7 6 5.7642 0.6844 0.0275 8 1 6.4011 0.0844 0.6776 9 7 6.3230 0.7479 -1.3296 10 6 5.5691 2.1083 0.6122 11 1 5.5168 2.0800 1.7006 12 6 6.6634 3.0362 0.1509 13 1 7.4423 2.6703 -0.5015 14 6 6.6700 4.3524 0.5618 15 7 5.7211 4.7980 1.3559 16 14 8.0259 5.5027 -0.0106 17 1 8.9645 4.7619 -0.8912 18 1 7.4293 6.6351 -0.7635 19 1 8.7621 6.0253 1.1684 20 6 4.2044 2.5115 -0.0054 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 4.1530 -0.4920 0.8841 25 1 4.1785 -0.4717 -0.9013 26 1 6.3758 -0.1714 -1.7422 27 1 5.7888 1.3755 -1.9116 28 1 5.7260 5.7239 1.6452 29 1 4.3385 2.8713 -1.0256 30 1 3.7222 3.2740 0.6063 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:21 Heat of formation + Delta-G solvation = -74.309995 kcal Electronic energy + Delta-G solvation = -14818.403995 eV Core-core repulsion = 12227.891079 eV Total energy + Delta-G solvation = -2590.512916 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.99883 -37.99465 -35.75372 -33.11942 -32.44365 -29.25884 -27.46731 -27.00073 -24.78446 -22.43863 -19.96452 -19.40066 -17.54044 -16.59809 -16.41863 -15.97734 -15.22287 -14.57156 -14.06379 -13.86106 -13.37739 -12.98540 -12.52938 -12.27121 -11.99918 -11.96331 -11.50680 -10.95352 -10.69731 -10.53905 -10.46455 -10.20847 -10.03469 -9.34480 -9.05256 -8.51766 -8.13428 -7.84591 -6.04900 -4.06285 2.64305 3.31488 3.33082 3.41355 3.46645 4.42635 4.51467 5.23684 5.28356 5.28509 5.34605 5.37407 5.56900 5.74204 5.78244 6.07728 6.40163 6.53705 6.64216 6.84076 6.87913 7.31642 7.56419 7.86499 7.97685 8.11020 8.16088 8.37361 8.79469 9.06174 9.59433 11.05583 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.043481 B = 0.008839 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.811504 B = 3166.854157 C = 3628.274526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.378 6.378 3 C 0.651 3.349 4 O -0.579 6.579 5 N -0.597 5.597 6 C 0.071 3.929 7 C 0.081 3.919 8 H 0.087 0.913 9 N -0.818 5.818 10 C 0.052 3.948 11 H 0.048 0.952 12 C -0.497 4.497 13 H 0.083 0.917 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.129 3.871 21 H 0.059 0.941 22 H 0.096 0.904 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.321 0.679 27 H 0.342 0.658 28 H 0.261 0.739 29 H 0.056 0.944 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 -9.812 -3.025 11.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.293 6.293 3 C 0.405 3.595 4 O -0.469 6.469 5 N -0.337 5.337 6 C -0.055 4.055 7 C -0.032 4.032 8 H 0.105 0.895 9 N -0.346 5.346 10 C 0.032 3.968 11 H 0.066 0.934 12 C -0.536 4.536 13 H 0.101 0.899 14 C -0.145 4.145 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.213 1.213 20 C 0.010 3.990 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.132 0.868 27 H 0.156 0.844 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.510 -9.063 -2.588 10.449 hybrid contribution -0.658 0.323 -0.514 0.895 sum -5.169 -8.740 -3.102 10.617 Atomic orbital electron populations 1.23060 0.75575 1.02662 1.02431 1.86241 1.23311 1.32081 1.87650 1.17819 0.82693 0.81722 0.77245 1.90963 1.64015 1.34901 1.57017 1.47759 1.00800 1.11204 1.73980 1.23067 0.92980 0.88838 1.00574 1.22626 0.88861 1.00175 0.91494 0.89471 1.58740 1.59173 1.13102 1.03552 1.20048 0.91297 0.89189 0.96241 0.93364 1.21104 1.09201 0.93514 1.29777 0.89919 1.25125 0.95953 0.98588 0.94854 1.69971 1.32912 1.16049 1.34170 0.86451 0.81982 0.80619 0.78450 1.19507 1.21259 1.21250 1.23040 0.91719 0.83370 1.00919 0.92176 0.88596 0.92280 0.92032 0.92816 0.86794 0.84409 0.92910 0.92547 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 10.56 101.05 1.07 1.81 16 2 O -0.38 -6.54 10.17 -40.32 -0.41 -6.95 16 3 C 0.65 13.66 8.62 54.06 0.47 14.12 16 4 O -0.58 -13.84 16.39 -19.28 -0.32 -14.16 16 5 N -0.60 -12.34 3.32 -176.17 -0.59 -12.93 16 6 C 0.07 1.22 6.63 -3.07 -0.02 1.20 16 7 C 0.08 1.50 3.93 -65.88 -0.26 1.24 16 8 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 9 N -0.82 -14.06 7.92 -3.11 -0.02 -14.09 16 10 C 0.05 1.21 2.75 -89.50 -0.25 0.96 16 11 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 12 C -0.50 -12.78 8.07 -34.44 -0.28 -13.06 16 13 H 0.08 2.13 6.95 -52.49 -0.36 1.77 16 14 C 0.06 1.52 5.37 -17.82 -0.10 1.43 16 15 N -0.89 -25.24 12.55 55.43 0.70 -24.54 16 16 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 C 0.13 3.02 5.58 -2.41 -0.01 3.01 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.83 8.02 -51.93 -0.42 0.41 16 26 H 0.32 4.45 9.04 -39.29 -0.36 4.09 16 27 H 0.34 6.15 8.21 -39.29 -0.32 5.83 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.06 1.35 7.66 -51.92 -0.40 0.95 16 30 H 0.08 2.26 7.64 -51.93 -0.40 1.86 16 LS Contribution 257.38 15.07 3.88 3.88 Total: -1.00 -30.24 257.38 -5.09 -35.32 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.92 Total: 6.78 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 0.62 Total: 10.71 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.09 Total: -51.55 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.73 Total: -21.10 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.24 -5.09 -35.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.987 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds