Wall clock time and date at job start Mon Mar 30 2020 02:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34639 * 116.99906 * 2 1 4 4 O 1.21507 * 120.00313 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00045 * 179.97438 * 3 2 1 6 6 C 1.47017 * 125.64778 * 0.02608 * 5 3 2 7 7 C 1.54323 * 107.27070 * 181.02072 * 6 5 3 8 8 H 1.09008 * 110.72020 * 140.55876 * 7 6 5 9 9 N 1.46903 * 110.72116 * 263.65123 * 7 6 5 10 10 C 1.55157 * 102.94217 * 22.19341 * 7 6 5 11 11 H 1.09000 * 111.00495 * 82.61060 * 10 7 6 12 12 C 1.50709 * 111.00160 * 206.42317 * 10 7 6 13 13 H 1.07994 * 119.99861 * 359.97438 * 12 10 7 14 14 C 1.37878 * 119.99517 * 179.97438 * 12 10 7 15 15 N 1.31514 * 120.00060 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99520 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47120 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47009 * 120.00231 * 16 14 12 19 19 H 1.48502 * 109.46980 * 239.99784 * 16 14 12 20 20 C 1.47421 * 125.64878 * 179.71421 * 5 3 2 21 21 H 1.09002 * 109.47379 * 300.00117 * 1 2 3 22 22 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47085 * 60.00320 * 1 2 3 24 24 H 1.08996 * 109.88548 * 300.43788 * 6 5 3 25 25 H 1.08998 * 109.88325 * 61.60291 * 6 5 3 26 26 H 1.00903 * 110.99850 * 298.54254 * 9 7 6 27 27 H 1.00897 * 110.99929 * 62.50147 * 9 7 6 28 28 H 0.96998 * 119.99290 * 179.97438 * 15 14 12 29 29 H 1.09008 * 110.36796 * 274.75033 * 20 5 3 30 30 H 1.09004 * 110.37008 * 37.07019 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.3273 0.1220 0.0006 7 6 5.7642 0.6844 0.0275 8 1 6.4011 0.0844 0.6776 9 7 6.3230 0.7479 -1.3296 10 6 5.5691 2.1083 0.6122 11 1 5.5168 2.0800 1.7006 12 6 6.6634 3.0362 0.1509 13 1 7.4423 2.6703 -0.5015 14 6 6.6700 4.3524 0.5618 15 7 5.7211 4.7980 1.3559 16 14 8.0259 5.5027 -0.0106 17 1 8.9645 4.7619 -0.8912 18 1 7.4293 6.6351 -0.7635 19 1 8.7621 6.0253 1.1684 20 6 4.2044 2.5115 -0.0054 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 4.1530 -0.4920 0.8841 25 1 4.1785 -0.4717 -0.9013 26 1 6.3758 -0.1714 -1.7422 27 1 5.7888 1.3755 -1.9116 28 1 5.7260 5.7239 1.6452 29 1 4.3385 2.8713 -1.0256 30 1 3.7222 3.2740 0.6063 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259739492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:21 Heat of formation + Delta-G solvation = -97.348326 kcal Electronic energy + Delta-G solvation = -14819.403012 eV Core-core repulsion = 12227.891079 eV Total energy + Delta-G solvation = -2591.511933 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.57724 -39.57553 -37.31511 -34.96175 -34.14329 -31.02343 -28.83806 -28.39609 -26.65346 -24.10918 -21.48368 -21.13999 -19.13197 -18.40567 -17.95627 -17.61102 -16.77259 -16.41500 -15.61523 -15.24136 -14.79442 -14.51450 -14.22678 -13.97968 -13.70014 -13.42788 -12.89784 -12.81527 -12.58647 -12.34529 -11.93687 -11.82148 -11.74732 -11.15725 -10.98546 -10.55459 -9.79083 -9.28716 -8.09413 -6.15939 1.14547 1.47188 1.50183 1.62008 1.68138 2.49950 3.07773 3.23727 3.81032 3.94016 4.16857 4.32978 4.35580 4.39633 4.57918 4.60533 4.68447 4.85958 5.03267 5.15365 5.22169 5.44573 5.67785 5.91392 6.28740 6.46645 6.55791 6.89730 7.01911 7.18626 7.53869 9.00846 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.043481 B = 0.008839 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.811504 B = 3166.854157 C = 3628.274526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.370 6.370 3 C 0.649 3.351 4 O -0.618 6.618 5 N -0.601 5.601 6 C 0.076 3.924 7 C 0.094 3.906 8 H 0.103 0.897 9 N -0.822 5.822 10 C 0.044 3.956 11 H 0.018 0.982 12 C -0.495 4.495 13 H 0.085 0.915 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.958 3.042 17 H -0.260 1.260 18 H -0.290 1.290 19 H -0.287 1.287 20 C 0.147 3.853 21 H 0.056 0.944 22 H 0.144 0.856 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.345 0.655 27 H 0.338 0.662 28 H 0.258 0.742 29 H 0.048 0.952 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -11.856 -3.987 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.284 6.284 3 C 0.405 3.595 4 O -0.511 6.511 5 N -0.341 5.341 6 C -0.049 4.049 7 C -0.018 4.018 8 H 0.121 0.879 9 N -0.352 5.352 10 C 0.024 3.976 11 H 0.036 0.964 12 C -0.534 4.534 13 H 0.103 0.897 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.785 3.215 17 H -0.184 1.184 18 H -0.216 1.216 19 H -0.213 1.213 20 C 0.026 3.974 21 H 0.074 0.926 22 H 0.162 0.838 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.159 0.841 27 H 0.151 0.849 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.102 -11.178 -3.565 12.429 hybrid contribution -0.855 0.873 -0.215 1.241 sum -4.957 -10.304 -3.780 12.043 Atomic orbital electron populations 1.23515 0.72949 1.05743 1.02345 1.86250 1.25710 1.29435 1.86995 1.17933 0.82647 0.82325 0.76641 1.90934 1.64939 1.36580 1.58607 1.47676 1.01324 1.11266 1.73869 1.23211 0.91071 0.87777 1.02806 1.22438 0.90287 0.96861 0.92253 0.87869 1.58636 1.58903 1.14731 1.02930 1.19916 0.90684 0.92315 0.94640 0.96402 1.21385 1.09457 0.93753 1.28777 0.89709 1.25891 0.97914 1.00379 0.95212 1.70117 1.34824 1.16101 1.35903 0.85492 0.79543 0.78608 0.77890 1.18382 1.21618 1.21327 1.22497 0.91951 0.83678 0.99274 0.92555 0.83835 0.92235 0.90320 0.89915 0.84116 0.84886 0.93327 0.93412 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.11 10.56 113.37 1.20 2.31 16 2 O -0.37 -11.94 10.17 -55.49 -0.56 -12.51 16 3 C 0.65 26.84 8.62 129.79 1.12 27.96 16 4 O -0.62 -29.96 16.39 19.82 0.32 -29.63 16 5 N -0.60 -24.45 3.32 -941.67 -3.13 -27.58 16 6 C 0.08 2.40 6.63 86.73 0.57 2.97 16 7 C 0.09 3.29 3.93 46.10 0.18 3.47 16 8 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 9 N -0.82 -26.08 7.92 -163.75 -1.30 -27.38 16 10 C 0.04 2.07 2.75 -10.07 -0.03 2.05 16 11 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 12 C -0.50 -25.43 8.07 25.60 0.21 -25.22 16 13 H 0.08 4.27 6.95 -2.91 -0.02 4.25 16 14 C 0.00 0.22 5.37 84.65 0.45 0.68 16 15 N -0.93 -54.19 12.55 21.45 0.27 -53.92 16 16 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 20 C 0.15 7.06 5.58 86.93 0.49 7.54 16 21 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 22 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.08 2.20 8.02 -2.39 -0.02 2.18 16 26 H 0.34 8.27 9.04 -89.69 -0.81 7.46 16 27 H 0.34 11.46 8.21 -89.70 -0.74 10.72 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.05 2.34 7.66 -2.38 -0.02 2.32 16 30 H 0.04 2.19 7.64 -2.38 -0.02 2.18 16 Total: -1.00 -66.55 257.38 1.43 -65.12 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.39 Total: 18.77 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: 4.19 Total: 21.75 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -4.16 Total: -108.88 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.24 Total: -42.14 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -66.55 1.43 -65.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.225 kcal (2) G-P(sol) polarization free energy of solvation -66.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds