Wall clock time and date at job start Mon Mar 30 2020 02:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34634 * 117.00083 * 2 1 4 4 O 1.21515 * 119.99715 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00345 * 179.97438 * 3 2 1 6 6 C 1.47024 * 125.65132 * 180.02562 * 5 3 2 7 7 C 1.54325 * 107.27073 * 178.98088 * 6 5 3 8 8 H 1.08997 * 110.72046 * 96.34985 * 7 6 5 9 9 C 1.50694 * 110.71726 * 219.44306 * 7 6 5 10 10 H 1.08002 * 120.00179 * 118.54418 * 9 7 6 11 11 C 1.37879 * 120.00472 * 298.54736 * 9 7 6 12 12 N 1.31514 * 119.99350 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 120.00608 * 179.97438 * 11 9 7 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00306 * 13 11 9 16 16 H 1.48504 * 109.46636 * 59.99865 * 13 11 9 17 17 C 1.55153 * 102.94058 * 337.80780 * 7 6 5 18 18 H 1.09000 * 111.00494 * 277.42849 * 17 7 6 19 19 N 1.46898 * 111.00463 * 153.58013 * 17 7 6 20 20 C 1.47423 * 125.64626 * 0.04747 * 5 3 2 21 21 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47088 * 299.99860 * 1 2 3 23 23 H 1.08994 * 109.47099 * 60.00181 * 1 2 3 24 24 H 1.09003 * 109.87902 * 59.56119 * 6 5 3 25 25 H 1.09001 * 110.00883 * 298.47161 * 6 5 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 27 27 H 1.00897 * 111.00213 * 179.97438 * 19 17 7 28 28 H 1.00898 * 110.99972 * 303.95599 * 19 17 7 29 29 H 1.09003 * 110.37080 * 322.92793 * 20 5 3 30 30 H 1.08998 * 110.37061 * 85.14166 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.2023 2.5081 0.0011 7 6 5.6901 2.0990 0.0278 8 1 6.1074 2.0960 -0.9792 9 6 6.4790 3.0155 0.9269 10 1 6.9857 2.6172 1.7935 11 6 6.5540 4.3628 0.6434 12 7 5.9374 4.8478 -0.4121 13 14 7.5313 5.4991 1.7584 14 1 7.4557 6.8879 1.2385 15 1 6.9662 5.4522 3.1308 16 1 8.9495 5.0600 1.7918 17 6 5.6450 0.6623 0.6118 18 1 5.5893 0.6845 1.7001 19 7 6.8003 -0.1256 0.1618 20 6 4.3299 0.1188 0.0001 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 3.9647 3.1002 0.8850 25 1 3.9928 3.0858 -0.8992 26 1 5.9898 5.7957 -0.6114 27 1 6.7711 -1.0598 0.5419 28 1 6.8536 -0.1463 -0.8456 29 1 3.9299 -0.6871 0.6155 30 1 4.4996 -0.2309 -1.0182 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739494.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:22 Heat of formation + Delta-G solvation = -76.922538 kcal Electronic energy + Delta-G solvation = -14732.973352 eV Core-core repulsion = 12142.347147 eV Total energy + Delta-G solvation = -2590.626205 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.97416 -37.89423 -35.74460 -33.18391 -32.77428 -29.46528 -27.41394 -26.78016 -24.80610 -22.23234 -20.11939 -19.50648 -17.49351 -16.83457 -16.32957 -16.11726 -15.20804 -14.48314 -14.28744 -13.92778 -13.10471 -13.04352 -12.53166 -12.40864 -11.98797 -11.79877 -11.70883 -10.91190 -10.68091 -10.50776 -10.48022 -10.24750 -10.10083 -9.48377 -9.12183 -8.50631 -8.21264 -7.89777 -6.08458 -4.10906 2.64344 3.32935 3.34008 3.38510 3.41093 4.40387 4.46638 5.13245 5.28543 5.30457 5.35413 5.37999 5.57747 5.60269 5.77993 6.12712 6.36628 6.58057 6.70954 6.83321 6.93034 7.34013 7.54859 7.80562 7.89638 7.98567 8.12887 8.29943 8.79716 8.92013 9.53718 11.01768 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.035888 B = 0.009146 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.023064 B = 3060.593366 C = 3632.097486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.379 6.379 3 C 0.651 3.349 4 O -0.579 6.579 5 N -0.594 5.594 6 C 0.141 3.859 7 C 0.058 3.942 8 H 0.044 0.956 9 C -0.505 4.505 10 H 0.064 0.936 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.898 3.102 14 H -0.288 1.288 15 H -0.277 1.277 16 H -0.276 1.276 17 C 0.082 3.918 18 H 0.090 0.910 19 N -0.823 5.823 20 C 0.070 3.930 21 H 0.096 0.904 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.264 0.736 27 H 0.328 0.672 28 H 0.337 0.663 29 H 0.064 0.936 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 -10.385 0.124 11.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.293 6.293 3 C 0.405 3.595 4 O -0.468 6.468 5 N -0.335 5.335 6 C 0.021 3.979 7 C 0.039 3.961 8 H 0.062 0.938 9 C -0.543 4.543 10 H 0.083 0.917 11 C -0.141 4.141 12 N -0.528 5.528 13 Si 0.726 3.274 14 H -0.214 1.214 15 H -0.202 1.202 16 H -0.201 1.201 17 C -0.031 4.031 18 H 0.108 0.892 19 N -0.350 5.350 20 C -0.056 4.056 21 H 0.114 0.886 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.150 0.850 29 H 0.082 0.918 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.920 -9.358 0.405 10.580 hybrid contribution -0.541 0.097 0.011 0.550 sum -5.461 -9.261 0.416 10.759 Atomic orbital electron populations 1.23060 0.75538 1.02659 1.02451 1.86230 1.23329 1.32055 1.87706 1.17769 0.82627 0.81729 0.77338 1.90964 1.63994 1.34893 1.56991 1.47635 1.00820 1.11106 1.73924 1.22643 0.90875 0.82174 1.02223 1.19765 0.89795 0.89028 0.97561 0.93808 1.20902 1.30871 0.91783 1.10770 0.91749 1.25045 0.95443 0.98399 0.95255 1.69927 1.42746 1.14048 1.26126 0.86557 0.80570 0.79519 0.80802 1.21363 1.20240 1.20118 1.22902 0.84421 0.96033 0.99725 0.89204 1.58726 1.43781 1.17832 1.14662 1.23281 0.92881 0.89119 1.00333 0.88596 0.92203 0.92224 0.91603 0.91550 0.92627 0.86089 0.85018 0.91792 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 10.56 101.05 1.07 1.80 16 2 O -0.38 -6.54 10.10 -40.31 -0.41 -6.94 16 3 C 0.65 13.76 8.62 54.05 0.47 14.22 16 4 O -0.58 -13.90 16.46 -19.28 -0.32 -14.21 16 5 N -0.59 -12.52 3.33 -176.31 -0.59 -13.11 16 6 C 0.14 3.40 5.48 -3.06 -0.02 3.38 16 7 C 0.06 1.37 2.55 -89.94 -0.23 1.14 16 8 H 0.04 1.11 8.09 -51.93 -0.42 0.69 16 9 C -0.50 -13.34 8.40 -34.44 -0.29 -13.63 16 10 H 0.06 1.70 7.78 -52.49 -0.41 1.29 16 11 C 0.06 1.65 5.33 -17.82 -0.10 1.56 16 12 N -0.89 -25.15 12.41 55.43 0.69 -24.46 16 13 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.08 1.55 3.62 -65.58 -0.24 1.31 16 18 H 0.09 1.78 8.04 -51.93 -0.42 1.36 16 19 N -0.82 -13.30 9.40 -2.86 -0.03 -13.32 16 20 C 0.07 1.21 6.60 -2.54 -0.02 1.20 16 21 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.75 7.81 -51.93 -0.41 1.34 16 25 H 0.07 1.75 8.00 -51.93 -0.42 1.33 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.33 4.23 9.08 -39.29 -0.36 3.88 16 28 H 0.34 5.08 8.90 -39.29 -0.35 4.73 16 29 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 30 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 LS Contribution 260.27 15.07 3.92 3.92 Total: -1.00 -30.74 260.27 -5.11 -35.85 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.01 Total: 5.17 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 0.65 Total: 10.99 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.07 Total: -50.89 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.72 Total: -21.16 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.74 -5.11 -35.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739494.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.074 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds