Wall clock time and date at job start Mon Mar 30 2020 02:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34634 * 117.00083 * 2 1 4 4 O 1.21515 * 119.99715 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00345 * 179.97438 * 3 2 1 6 6 C 1.47024 * 125.65132 * 180.02562 * 5 3 2 7 7 C 1.54325 * 107.27073 * 178.98088 * 6 5 3 8 8 H 1.08997 * 110.72046 * 96.34985 * 7 6 5 9 9 C 1.50694 * 110.71726 * 219.44306 * 7 6 5 10 10 H 1.08002 * 120.00179 * 118.54418 * 9 7 6 11 11 C 1.37879 * 120.00472 * 298.54736 * 9 7 6 12 12 N 1.31514 * 119.99350 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 120.00608 * 179.97438 * 11 9 7 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00306 * 13 11 9 16 16 H 1.48504 * 109.46636 * 59.99865 * 13 11 9 17 17 C 1.55153 * 102.94058 * 337.80780 * 7 6 5 18 18 H 1.09000 * 111.00494 * 277.42849 * 17 7 6 19 19 N 1.46898 * 111.00463 * 153.58013 * 17 7 6 20 20 C 1.47423 * 125.64626 * 0.04747 * 5 3 2 21 21 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47088 * 299.99860 * 1 2 3 23 23 H 1.08994 * 109.47099 * 60.00181 * 1 2 3 24 24 H 1.09003 * 109.87902 * 59.56119 * 6 5 3 25 25 H 1.09001 * 110.00883 * 298.47161 * 6 5 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 27 27 H 1.00897 * 111.00213 * 179.97438 * 19 17 7 28 28 H 1.00898 * 110.99972 * 303.95599 * 19 17 7 29 29 H 1.09003 * 110.37080 * 322.92793 * 20 5 3 30 30 H 1.08998 * 110.37061 * 85.14166 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.2023 2.5081 0.0011 7 6 5.6901 2.0990 0.0278 8 1 6.1074 2.0960 -0.9792 9 6 6.4790 3.0155 0.9269 10 1 6.9857 2.6172 1.7935 11 6 6.5540 4.3628 0.6434 12 7 5.9374 4.8478 -0.4121 13 14 7.5313 5.4991 1.7584 14 1 7.4557 6.8879 1.2385 15 1 6.9662 5.4522 3.1308 16 1 8.9495 5.0600 1.7918 17 6 5.6450 0.6623 0.6118 18 1 5.5893 0.6845 1.7001 19 7 6.8003 -0.1256 0.1618 20 6 4.3299 0.1188 0.0001 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 3.9647 3.1002 0.8850 25 1 3.9928 3.0858 -0.8992 26 1 5.9898 5.7957 -0.6114 27 1 6.7711 -1.0598 0.5419 28 1 6.8536 -0.1463 -0.8456 29 1 3.9299 -0.6871 0.6155 30 1 4.4996 -0.2309 -1.0182 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259739494.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:22 Heat of formation + Delta-G solvation = -100.766586 kcal Electronic energy + Delta-G solvation = -14734.007308 eV Core-core repulsion = 12142.347147 eV Total energy + Delta-G solvation = -2591.660160 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.56810 -39.49767 -37.31591 -35.01152 -34.48098 -31.26285 -28.74224 -28.23646 -26.69781 -23.92896 -21.65946 -21.25627 -19.10031 -18.61227 -17.97687 -17.69190 -16.85016 -16.28454 -15.80345 -15.36067 -14.59450 -14.46588 -14.32249 -14.04681 -13.70077 -13.49937 -12.95838 -12.77082 -12.50178 -12.38379 -12.10917 -11.82270 -11.81856 -11.28408 -11.04904 -10.57961 -9.81502 -9.39434 -8.15282 -6.23765 1.12810 1.46069 1.47311 1.54581 1.67515 2.45340 3.03340 3.17177 3.78582 3.91003 4.11214 4.33155 4.34840 4.37380 4.55452 4.59857 4.68491 4.83540 5.07472 5.09611 5.18448 5.43989 5.65306 5.84399 6.27673 6.39585 6.49724 6.83146 6.85670 7.17850 7.44499 8.94023 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.035888 B = 0.009146 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.023064 B = 3060.593366 C = 3632.097486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.369 6.369 3 C 0.651 3.349 4 O -0.617 6.617 5 N -0.601 5.601 6 C 0.160 3.840 7 C 0.054 3.946 8 H 0.024 0.976 9 C -0.515 4.515 10 H 0.063 0.937 11 C 0.011 3.989 12 N -0.922 5.922 13 Si 0.957 3.043 14 H -0.288 1.288 15 H -0.273 1.273 16 H -0.267 1.267 17 C 0.097 3.903 18 H 0.084 0.916 19 N -0.826 5.826 20 C 0.076 3.924 21 H 0.144 0.856 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.262 0.738 27 H 0.351 0.649 28 H 0.345 0.655 29 H 0.094 0.906 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 -12.422 0.720 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.283 6.283 3 C 0.406 3.594 4 O -0.509 6.509 5 N -0.341 5.341 6 C 0.039 3.961 7 C 0.034 3.966 8 H 0.042 0.958 9 C -0.554 4.554 10 H 0.081 0.919 11 C -0.188 4.188 12 N -0.561 5.561 13 Si 0.782 3.218 14 H -0.214 1.214 15 H -0.198 1.198 16 H -0.192 1.192 17 C -0.016 4.016 18 H 0.102 0.898 19 N -0.356 5.356 20 C -0.048 4.048 21 H 0.162 0.838 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.165 0.835 28 H 0.159 0.841 29 H 0.112 0.888 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.822 -11.467 1.009 12.480 hybrid contribution -0.639 0.650 -0.188 0.931 sum -5.461 -10.816 0.821 12.145 Atomic orbital electron populations 1.23527 0.72848 1.05795 1.02394 1.86241 1.25768 1.29274 1.87012 1.17881 0.82509 0.82393 0.76624 1.90935 1.64905 1.36587 1.58501 1.47563 1.01445 1.11143 1.73912 1.22071 0.92053 0.83079 0.98929 1.19643 0.88598 0.91986 0.96361 0.95792 1.21246 1.30760 0.92452 1.10903 0.91860 1.25812 0.96467 1.00036 0.96494 1.70059 1.44200 1.14078 1.27768 0.85620 0.79522 0.77537 0.79073 1.21421 1.19804 1.19222 1.22565 0.86294 0.93609 0.99131 0.89825 1.58582 1.42261 1.19234 1.15507 1.23430 0.91128 0.88309 1.01960 0.83767 0.92343 0.92362 0.94891 0.94833 0.92923 0.83454 0.84109 0.88807 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.10 10.56 113.37 1.20 2.29 16 2 O -0.37 -11.85 10.10 -55.44 -0.56 -12.41 16 3 C 0.65 27.07 8.62 129.79 1.12 28.19 16 4 O -0.62 -29.99 16.46 19.79 0.33 -29.66 16 5 N -0.60 -25.02 3.33 -942.15 -3.13 -28.15 16 6 C 0.16 8.00 5.48 86.73 0.48 8.47 16 7 C 0.05 2.56 2.55 -10.35 -0.03 2.53 16 8 H 0.02 1.24 8.09 -2.39 -0.02 1.22 16 9 C -0.52 -27.46 8.40 25.60 0.22 -27.24 16 10 H 0.06 3.32 7.78 -2.91 -0.02 3.29 16 11 C 0.01 0.61 5.33 84.66 0.45 1.06 16 12 N -0.92 -53.56 12.41 21.45 0.27 -53.30 16 13 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 14 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 C 0.10 3.51 3.62 46.30 0.17 3.68 16 18 H 0.08 3.16 8.04 -2.39 -0.02 3.14 16 19 N -0.83 -24.60 9.40 -162.97 -1.53 -26.13 16 20 C 0.08 2.46 6.60 86.85 0.57 3.03 16 21 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.03 1.82 7.81 -2.39 -0.02 1.80 16 25 H 0.03 1.85 8.00 -2.39 -0.02 1.84 16 26 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 27 H 0.35 7.84 9.08 -89.70 -0.81 7.02 16 28 H 0.35 9.57 8.90 -89.70 -0.80 8.77 16 29 H 0.09 2.53 8.04 -2.39 -0.02 2.51 16 30 H 0.08 2.21 8.08 -2.39 -0.02 2.19 16 Total: -1.00 -67.70 260.27 1.11 -66.59 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -0.46 Total: 15.38 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 4.17 Total: 22.02 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -4.40 Total: -107.59 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.23 Total: -42.08 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.70 1.11 -66.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739494.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.174 kcal (2) G-P(sol) polarization free energy of solvation -67.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds