Wall clock time and date at job start Mon Mar 30 2020 02:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47106 * 2 1 4 4 H 1.09000 * 109.46925 * 182.08402 * 3 2 1 5 5 C 1.50693 * 109.47341 * 62.07854 * 3 2 1 6 6 H 1.08002 * 120.00379 * 240.00519 * 5 3 2 7 7 C 1.37873 * 119.99977 * 60.00163 * 5 3 2 8 8 N 1.31517 * 119.99990 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00191 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47441 * 89.99671 * 9 7 5 11 11 H 1.48500 * 109.47134 * 209.99954 * 9 7 5 12 12 H 1.48502 * 109.46597 * 329.99865 * 9 7 5 13 13 C 1.53005 * 109.46825 * 302.07675 * 3 2 1 14 14 C 1.52580 * 109.23045 * 300.31923 * 13 3 2 15 15 C 1.53100 * 109.95883 * 169.00364 * 14 13 3 16 16 S 1.81749 * 108.84044 * 63.02439 * 15 14 13 17 17 C 1.81750 * 102.21954 * 306.73508 * 16 15 14 18 18 C 1.52577 * 109.22635 * 179.07999 * 13 3 2 19 19 H 1.08995 * 109.47538 * 306.03837 * 1 2 3 20 20 H 1.09000 * 109.46786 * 66.04240 * 1 2 3 21 21 H 1.08998 * 109.47161 * 186.03590 * 1 2 3 22 22 H 1.08998 * 109.47069 * 239.99756 * 2 1 3 23 23 H 1.09001 * 109.47027 * 119.99548 * 2 1 3 24 24 H 0.97002 * 119.99645 * 179.97438 * 8 7 5 25 25 H 1.09007 * 109.22325 * 59.68034 * 13 3 2 26 26 H 1.08994 * 109.38705 * 289.15537 * 14 13 3 27 27 H 1.08999 * 109.39100 * 48.85050 * 14 13 3 28 28 H 1.09000 * 109.57155 * 303.22082 * 15 14 13 29 29 H 1.08997 * 109.57267 * 182.83143 * 15 14 13 30 30 H 1.09003 * 109.57732 * 293.45922 * 17 16 15 31 31 H 1.08999 * 109.57867 * 173.07285 * 17 16 15 32 32 H 1.09010 * 109.39252 * 311.14972 * 18 13 3 33 33 H 1.09002 * 109.39275 * 70.94588 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 -0.0374 5 6 1.5802 2.1379 1.2553 6 1 0.9564 3.0170 1.1882 7 6 1.9559 1.6519 2.4897 8 7 2.7150 0.5811 2.5715 9 14 1.3854 2.5134 4.0459 10 1 0.0919 1.9329 4.4874 11 1 2.4006 2.3298 5.1139 12 1 1.2101 3.9627 3.7734 13 6 1.4877 2.1787 -1.2223 14 6 1.9499 1.4656 -2.4896 15 6 1.1942 2.0140 -3.7030 16 16 1.6023 3.7738 -3.9025 17 6 1.2292 4.4444 -2.2549 18 6 1.9809 3.6224 -1.2047 19 1 -0.3634 0.6046 0.8309 20 1 -0.3633 0.4173 -0.9391 21 1 -0.3633 -1.0219 0.1081 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.9796 0.2394 3.4399 25 1 0.3983 2.1711 -1.1840 26 1 3.0192 1.6269 -2.6261 27 1 1.7559 0.3972 -2.3950 28 1 0.1213 1.9035 -3.5454 29 1 1.4923 1.4663 -4.5969 30 1 0.1570 4.3813 -2.0692 31 1 1.5501 5.4847 -2.2028 32 1 1.8085 4.0517 -0.2176 33 1 3.0479 3.6431 -1.4267 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259745153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:39 Heat of formation + Delta-G solvation = -32.441421 kcal Electronic energy + Delta-G solvation = -13207.470826 eV Core-core repulsion = 11165.066682 eV Total energy + Delta-G solvation = -2042.404144 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.71591 -33.61897 -31.48236 -30.84633 -27.88465 -25.30481 -23.35534 -22.25431 -20.54292 -18.45843 -16.55777 -15.97298 -14.85314 -14.15822 -13.86459 -13.63212 -13.35961 -12.83675 -12.50298 -12.26977 -12.04705 -11.81341 -11.36000 -10.94169 -10.89241 -10.60076 -10.45334 -10.23453 -9.95532 -9.69132 -9.48435 -9.26255 -8.91445 -8.60001 -8.28709 -7.36471 -5.97881 -4.02974 2.16339 2.88551 3.28576 3.36336 3.38243 4.42493 5.20822 5.31037 5.34829 5.37632 5.52663 5.72084 5.82550 5.98396 6.11383 6.34231 6.39161 6.45466 6.54676 6.58683 6.68826 6.89377 6.99108 7.05201 7.15308 7.46639 7.52356 7.75762 7.94880 8.17126 8.46318 8.99092 9.60491 11.07520 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.039977 B = 0.009684 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.234339 B = 2890.761547 C = 3301.516302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.118 4.118 3 C 0.056 3.944 4 H 0.024 0.976 5 C -0.503 4.503 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C -0.084 4.084 14 C -0.121 4.121 15 C -0.071 4.071 16 S -0.303 6.303 17 C -0.071 4.071 18 C -0.111 4.111 19 H 0.061 0.939 20 H 0.029 0.971 21 H 0.021 0.979 22 H 0.016 0.984 23 H 0.090 0.910 24 H 0.259 0.741 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 2.531 -8.013 8.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.155 4.155 3 C 0.038 3.962 4 H 0.043 0.957 5 C -0.541 4.541 6 H 0.073 0.927 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.103 4.103 14 C -0.160 4.160 15 C -0.219 4.219 16 S -0.077 6.077 17 C -0.219 4.219 18 C -0.150 4.150 19 H 0.080 0.920 20 H 0.048 0.952 21 H 0.040 0.960 22 H 0.035 0.965 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.336 2.960 -8.791 9.566 hybrid contribution -0.805 -0.199 1.941 2.111 sum -3.142 2.761 -6.850 8.026 Atomic orbital electron populations 1.21671 0.98401 0.98518 1.00417 1.21581 0.93924 0.99756 1.00279 1.18664 0.95746 0.91303 0.90502 0.95743 1.21123 1.31005 1.11522 0.90485 0.92697 1.24929 0.95177 0.95008 0.98795 1.69871 1.36246 1.22527 1.24168 0.86724 0.78397 0.80070 0.83582 1.20858 1.21363 1.20012 1.21193 0.99927 0.93841 0.95339 1.21918 0.99843 1.00918 0.93304 1.23437 1.03051 0.92923 1.02457 1.86471 1.89499 1.10443 1.21335 1.23526 1.03314 1.01873 0.93224 1.21773 0.99231 0.95667 0.98314 0.92010 0.95200 0.95963 0.96506 0.89186 0.93140 0.92237 0.91533 0.90572 0.90463 0.88898 0.90476 0.88842 0.89261 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.19 37.16 0.34 -2.40 16 2 C -0.12 -2.66 5.12 -26.73 -0.14 -2.80 16 3 C 0.06 1.31 1.67 -91.77 -0.15 1.15 16 4 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 5 C -0.50 -12.82 6.40 -34.45 -0.22 -13.04 16 6 H 0.05 1.39 6.70 -52.49 -0.35 1.04 16 7 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -24.67 11.30 55.43 0.63 -24.04 16 9 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C -0.08 -1.62 1.11 -91.05 -0.10 -1.72 16 14 C -0.12 -2.05 4.94 -26.90 -0.13 -2.18 16 15 C -0.07 -1.05 6.45 37.21 0.24 -0.81 16 16 S -0.30 -4.75 22.33 -107.50 -2.40 -7.15 16 17 C -0.07 -1.11 6.45 37.21 0.24 -0.87 16 18 C -0.11 -2.02 4.94 -26.90 -0.13 -2.15 16 19 H 0.06 1.39 7.09 -51.93 -0.37 1.02 16 20 H 0.03 0.55 6.73 -51.93 -0.35 0.20 16 21 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.02 0.34 6.28 -51.93 -0.33 0.02 16 23 H 0.09 2.33 6.02 -51.93 -0.31 2.02 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.06 1.17 6.43 -51.93 -0.33 0.84 16 26 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 27 H 0.08 1.29 5.89 -51.93 -0.31 0.98 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.75 6.22 -51.92 -0.32 1.43 16 33 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 LS Contribution 260.71 15.07 3.93 3.93 Total: -1.00 -26.26 260.71 -8.20 -34.45 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.18 Total: 0.37 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: -0.15 Total: -23.27 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.63 Total: -24.04 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -2.40 Total: -7.15 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.26 -8.20 -34.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259745153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.010 kcal (2) G-P(sol) polarization free energy of solvation -26.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds